# Generated by roxygen2: do not edit by hand

export(LINKER_EvaluateTestSet)
export(LINKER_LearnRegulatoryPrograms)
export(LINKER_ReassignGenesToClusters)
export(LINKER_corrClust)
export(LINKER_extract_modules)
export(LINKER_init)
export(LINKER_run)
export(LINKER_runPhase1)
export(LINKER_runPhase2)
export(NET_compute_graph_all_LASSO1se)
export(NET_compute_graph_all_LASSOmin)
export(NET_compute_graph_all_LM)
export(NET_compute_graph_all_VBSR)
export(NET_run)
export(createModuleSummary)
export(create_html_summary)
export(gen_heatmap)
export(generatecliques)
export(generategraph)
export(heatmapplot)
export(html_from_graph)
export(orderGraphWeights)
export(plot_correlation_row)
export(plot_expression_row)
export(plot_gene_pair_scatter)
export(plot_gene_pair_scatter_by_class)
export(plot_igraph)
export(plotcliques)
export(preparedata)
export(preparerewiring)
export(rawsummary)
export(return_layout)
export(return_layout_phenotype)
export(rewiring_gene_level)
export(rewiring_regulon_level)
export(rewiring_test)
export(rewiring_test_pair_detail)
export(runrewiring)
export(selectmethod)
useDynLib(TraRe, .registration = TRUE)
