Package: SimBu
Title: Simulate Bulk RNA-seq Datasets from Single-Cell Datasets
Version: 1.0.2
Authors@R: 
    person(given = "Alexander",
           family = "Dietrich",
           role = c("aut", "cre"),
           email = "alex.dietrich@tum.de")
Description: SimBu can be used to simulate bulk RNA-seq datasets with known cell type fractions. 
    You can either use your own single-cell study for the simulation or the sfaira database. 
    Different pre-defined simulation scenarios exist, as are options to run custom simulations.
    Additionally, expression values can be adapted by adding an mRNA bias, which produces more
    biologically relevant simulations.
License: GPL-3 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
Imports: basilisk, BiocParallel, data.table, dplyr, ggplot2, tools,
        Matrix (>= 1.3.3), methods, phyloseq, proxyC, RColorBrewer,
        RCurl, reticulate, sparseMatrixStats, SummarizedExperiment,
        tidyr
Suggests: curl, knitr, matrixStats, rmarkdown, Seurat, testthat (>=
        3.0.0)
URL: https://github.com/omnideconv/SimBu
BugReports: https://github.com/omnideconv/SimBu/issues
VignetteBuilder: knitr
Config/testthat/edition: 3
StagedInstall: no
biocViews: Software, RNASeq, SingleCell
git_url: https://git.bioconductor.org/packages/SimBu
git_branch: RELEASE_3_16
git_last_commit: 326db4d
git_last_commit_date: 2023-03-13
Date/Publication: 2023-03-14
NeedsCompilation: no
Packaged: 2023-03-15 01:34:26 UTC; biocbuild
Author: Alexander Dietrich [aut, cre]
Maintainer: Alexander Dietrich <alex.dietrich@tum.de>
Built: R 4.2.2; ; 2023-03-15 13:04:31 UTC; windows
