BaseReport-class        Class '"BaseReport"'
CSVFile                 Function for creating and initializing a
                        CSVFile for publishing results
CSVFile-class           Class '"CSVFile"'
DataPackage             Function for creating and initializing an
                        object of class DataPackage.
DataPackage-class       Class '"DataPackage"'
HTMLReport-class        Class '"HTMLReport"'
HTMLReportRef-class     Class '"HTMLReportRef"'
Link                    Create a table of Links
ReportHandlers-class    Class '"ReportHandlers"'
custHeaderPanel         Define a header panel with custom JS/CSS for a
                        Shiny app
filename-methods        Methods for getting the name of a file for a
                        CSVFile or HTMLReport.
finish-methods          Finalizing reports after publishing results
makeOldHTMLReport       Creating and initializing an HTMLReport object
mockRnaSeqData          A counts table of mock RNA-deq data in mouse.
modifyReportDF-methods
                        Decorate the Basic data.frame Representation of
                        an Object
objectToHTML-methods    Transform R objects into HTML form to be
                        inserted in HTML reports
publish-methods         Methods for publishing a variety of data types
                        in selected output formats
readReport              Read in an Existing Report
reporting.theme         Color theme for use in ReportingTools
reporting.theme.alternate
                        Alternate color theme for use in ReportingTools
toReportDF-methods      Class Specific Default Behavior for
                        Transforming Objects to data.frames
validConnection         Determine connection validity
