Package: MsExperiment
Title: Infrastructure for Mass Spectrometry Experiments
Version: 1.0.0
Description: Infrastructure to store and manage all aspects related to
   a complete proteomics or metabolomics mass spectrometry (MS) experiment. The
   MsExperiment package provides light-weight and flexible containers for MS
   experiments building on the new MS infrastructure provided by the Spectra,
   QFeatures and related packages. Along with raw data representations, links
   to original data files and sample annotations, additional metadata or
   annotations can also be stored within the MsExperiment container. To
   guarantee maximum flexibility only minimal constraints are put on the type
   and content of the data within the containers.
Authors@R: c(person(given = "Laurent", family = "Gatto",
                    comment = c(ORCID = "0000-0002-1520-2268"),
                    email = "laurent.gatto@uclouvain.be",
                    role = c("aut", "cre")),
             person(given = "Johannes", family = "Rainer",
                    comment = c(ORCID = "0000-0002-6977-7147"),
                    email = "Johannes.Rainer@eurac.edu",
                    role = "aut"),
             person(given = "Sebastian", family = "Gibb",
                    comment = c(ORCID = "0000-0001-7406-4443"),
                    email = "mail@sebastiangibb.de",
                    role = "aut"))
Depends: R (>= 4.2), ProtGenerics (>= 1.9.1),
Imports: methods, S4Vectors, IRanges, Spectra, SummarizedExperiment,
        QFeatures
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19),
        rmarkdown, rpx, mzR, msdata
License: Artistic-2.0
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsExperiment/issues
URL: https://github.com/RforMassSpectrometry/MsExperiment
biocViews: Infrastructure, Proteomics, MassSpectrometry, Metabolomics,
        ExperimentalDesign, DataImport
RoxygenNote: 7.2.1
Roxygen: list(markdown=TRUE)
Collate: 'MsExperiment-functions.R' 'MsExperimentFiles.R'
        'MsExperiment.R' 'existMsExperimentFiles.R'
git_url: https://git.bioconductor.org/packages/MsExperiment
git_branch: RELEASE_3_16
git_last_commit: 605b25f
git_last_commit_date: 2022-11-01
Date/Publication: 2022-12-28
NeedsCompilation: no
Packaged: 2022-12-29 01:00:55 UTC; biocbuild
Author: Laurent Gatto [aut, cre] (<https://orcid.org/0000-0002-1520-2268>),
  Johannes Rainer [aut] (<https://orcid.org/0000-0002-6977-7147>),
  Sebastian Gibb [aut] (<https://orcid.org/0000-0001-7406-4443>)
Maintainer: Laurent Gatto <laurent.gatto@uclouvain.be>
Built: R 4.2.2; ; 2022-12-29 13:09:29 UTC; windows
