%<>%	reexports
%>%	reexports
alphasample-class	alphasample-class
arrange	reexports
as.MPSE	as.MPSE
as.mpse	as.MPSE
as.phyloseq	as.phyloseq
as.phyloseq.MPSE	as.phyloseq
as.phyloseq.tbl_mpse	as.phyloseq
as.treedata	reexports
as.treedata.taxonomyTable	as.treedata
as_phyloseq	as.phyloseq
as_tibble	reexports
build_tree	build_tree
build_tree,character	build_tree
build_tree,character-method	build_tree
build_tree,DNAbin	build_tree
build_tree,DNAbin-method	build_tree
build_tree,DNAStringSet	build_tree
build_tree,DNAStringSet-method	build_tree
colData<-	reexports
colData<-,MPSE,DataFrame-method	MPSE-accessors
colData<-,MPSE,NULL-method	MPSE-accessors
convert_to_treedata	convert_to_treedata
data-hmp_aerobiosis_small	data-hmp_aerobiosis_small
data-kostic2012crc	data-kostic2012crc
data-test_otu_data	data-test_otu_data
diffAnalysisClass-class	diffAnalysisClass-class
diff_analysis	diff_analysis
diff_analysis.data.frame	diff_analysis
diff_analysis.phyloseq	diff_analysis
distinct	reexports
drop_taxa	drop_taxa
drop_taxa,data.frame	drop_taxa
drop_taxa,data.frame-method	drop_taxa
drop_taxa,phyloseq	drop_taxa
drop_taxa,phyloseq-method	drop_taxa
dr_extract	dr_extract
extract	reexports
extract_binary_offspring	extract_binary_offspring
filter	reexports
generalizedFC	generalizedFC
generalizedFC.default	generalizedFC
generalizedFC.formula	generalizedFC
get_alltaxadf	get_alltaxadf
get_alltaxadf,data.frame	get_alltaxadf
get_alltaxadf,data.frame-method	get_alltaxadf
get_alltaxadf,phyloseq	get_alltaxadf
get_alltaxadf,phyloseq-method	get_alltaxadf
get_alphaindex	get_alphaindex
get_alphaindex,data.frame	get_alphaindex
get_alphaindex,data.frame-method	get_alphaindex
get_alphaindex,integer	get_alphaindex
get_alphaindex,integer-method	get_alphaindex
get_alphaindex,matrix	get_alphaindex
get_alphaindex,matrix-method	get_alphaindex
get_alphaindex,numeric	get_alphaindex
get_alphaindex,numeric-method	get_alphaindex
get_alphaindex,phyloseq	get_alphaindex
get_alphaindex,phyloseq-method	get_alphaindex
get_clust	get_clust
get_clust.data.frame	get_clust
get_clust.dist	get_clust
get_clust.phyloseq	get_clust
get_coord	get_coord
get_coord.pcoa	get_coord
get_coord.prcomp	get_coord
get_count	get_count
get_dist	get_dist
get_dist.data.frame	get_dist
get_dist.phyloseq	get_dist
get_mean_median	get_mean_median
get_NRI_NTI	get_NRI_NTI-methods
get_NRI_NTI,data.frame	get_NRI_NTI-methods
get_NRI_NTI,data.frame-method	get_NRI_NTI-methods
get_NRI_NTI,matrix	get_NRI_NTI-methods
get_NRI_NTI,matrix-method	get_NRI_NTI-methods
get_NRI_NTI,phyloseq	get_NRI_NTI-methods
get_NRI_NTI,phyloseq-method	get_NRI_NTI-methods
get_pca	get_pca
get_pca.data.frame	get_pca
get_pca.phyloseq	get_pca
get_pcoa	get_pcoa
get_pcoa.data.frame	get_pcoa
get_pcoa.dist	get_pcoa
get_pcoa.phyloseq	get_pcoa
get_pvalue	get_pvalue
get_pvalue.glm	get_pvalue
get_pvalue.htest	get_pvalue
get_pvalue.lm	get_pvalue
get_pvalue.lme	get_pvalue
get_pvalue.negbin	get_pvalue
get_pvalue.QuadTypeIndependenceTest	get_pvalue
get_pvalue.ScalarIndependenceTest	get_pvalue
get_rarecurve	get_rarecurve
get_rarecurve,data.frame	get_rarecurve
get_rarecurve,data.frame-method	get_rarecurve
get_rarecurve,phyloseq	get_rarecurve
get_rarecurve,phyloseq-method	get_rarecurve
get_ratio	get_count
get_sampledflist	get_sampledflist
get_taxadf	get_taxadf
get_taxadf,data.frame	get_taxadf
get_taxadf,data.frame-method	get_taxadf
get_taxadf,phyloseq	get_taxadf
get_taxadf,phyloseq-method	get_taxadf
get_upset	get_upset
get_upset,data.frame	get_upset
get_upset,data.frame-method	get_upset
get_upset,phyloseq	get_upset
get_upset,phyloseq-method	get_upset
get_varct	get_varct
get_varct.pcasample	get_varct
get_varct.pcoa	get_varct
get_varct.prcomp	get_varct
get_vennlist	get_vennlist
get_vennlist,data.frame-method	get_vennlist
get_vennlist,data.framet	get_vennlist
get_vennlist,phyloseq	get_vennlist
get_vennlist,phyloseq-method	get_vennlist
ggbartax	ggbartax
ggbartax.data.frame	ggbartax
ggbartax.phyloseq	ggbartax
ggbartaxa	ggbartax
ggbox	ggbox
ggbox,alphasample	ggbox
ggbox,alphasample-method	ggbox
ggbox,data.frame	ggbox
ggbox,data.frame-method	ggbox
ggclust	ggclust
ggclust.treedata	ggclust
ggdiffbartaxa	ggdifftaxbar
ggdiffbox	ggdiffbox
ggdiffbox,diffAnalysisClass	ggdiffbox
ggdiffbox,diffAnalysisClass-method	ggdiffbox
ggdiffclade	ggdiffclade
ggdiffclade.data.frame	ggdiffclade
ggdiffclade.diffAnalysisClass	ggdiffclade
ggdifftaxbar	ggdifftaxbar
ggdifftaxbar,diffAnalysisClass	ggdifftaxbar
ggdifftaxbar,diffAnalysisClass-method	ggdifftaxbar
ggdifftaxbar.featureMeanMedian	ggdifftaxbar
ggeffectsize	ggeffectsize
ggeffectsize.data.frame	ggeffectsize
ggeffectsize.diffAnalysisClass	ggeffectsize
ggordpoint	ggordpoint
ggordpoint.default	ggordpoint
ggordpoint.pcasample	ggordpoint
ggrarecurve	ggrarecurve
ggrarecurve.data.frame	ggrarecurve
ggrarecurve.phyloseq	ggrarecurve
ggrarecurve.rarecurve	ggrarecurve
group_by	reexports
hmp_aerobiosis_small	data-hmp_aerobiosis_small
ImportDada2	ImportDada2
ImportQiime2	ImportQiime2
import_dada2	ImportDada2
import_qiime2	ImportQiime2
kostic2012crc	data-kostic2012crc
left_join	reexports
mouse.time.mpse	mouse.time.mpse
MPSE	MPSE
MPSE-accessors	MPSE-accessors
MPSE-class	MPSE-class
mp_adonis	mp_adonis-methods
mp_adonis,grouped_df_mpse	mp_adonis-methods
mp_adonis,grouped_df_mpse-method	mp_adonis-methods
mp_adonis,MPSE	mp_adonis-methods
mp_adonis,MPSE-method	mp_adonis-methods
mp_adonis,tbl_mpse	mp_adonis-methods
mp_adonis,tbl_mpse-method	mp_adonis-methods
mp_aggregate	mp_aggregate-methods
mp_aggregate,MPSE	mp_aggregate-methods
mp_aggregate,MPSE-method	mp_aggregate-methods
mp_aggregate_clade	mp_aggregate_clade-methods
mp_aggregate_clade,grouped_df_mpse	mp_aggregate_clade-methods
mp_aggregate_clade,grouped_df_mpse-method	mp_aggregate_clade-methods
mp_aggregate_clade,MPSE	mp_aggregate_clade-methods
mp_aggregate_clade,MPSE-method	mp_aggregate_clade-methods
mp_aggregate_clade,tbl_mpse	mp_aggregate_clade-methods
mp_aggregate_clade,tbl_mpse-method	mp_aggregate_clade-methods
mp_anosim	mp_anosim-methods
mp_anosim,grouped_df_mpse	mp_anosim-methods
mp_anosim,grouped_df_mpse-method	mp_anosim-methods
mp_anosim,MPSE	mp_anosim-methods
mp_anosim,MPSE-method	mp_anosim-methods
mp_anosim,tbl_mpse	mp_anosim-methods
mp_anosim,tbl_mpse-method	mp_anosim-methods
mp_balance_clade	mp_balance_clade-methods
mp_balance_clade,grouped_df_mpse	mp_balance_clade-methods
mp_balance_clade,grouped_df_mpse-method	mp_balance_clade-methods
mp_balance_clade,MPSE	mp_balance_clade-methods
mp_balance_clade,MPSE-method	mp_balance_clade-methods
mp_balance_clade,tbl_mpse	mp_balance_clade-methods
mp_balance_clade,tbl_mpse-method	mp_balance_clade-methods
mp_cal_abundance	mp_cal_abundance-methods
mp_cal_abundance,grouped_df_mpse	mp_cal_abundance-methods
mp_cal_abundance,grouped_df_mpse-method	mp_cal_abundance-methods
mp_cal_abundance,MPSE	mp_cal_abundance-methods
mp_cal_abundance,MPSE-method	mp_cal_abundance-methods
mp_cal_abundance,tbl_mpse	mp_cal_abundance-methods
mp_cal_abundance,tbl_mpse-method	mp_cal_abundance-methods
mp_cal_alpha	mp_cal_alpha-methods
mp_cal_alpha,grouped_df_mpse	mp_cal_alpha-methods
mp_cal_alpha,grouped_df_mpse-method	mp_cal_alpha-methods
mp_cal_alpha,MPSE	mp_cal_alpha-methods
mp_cal_alpha,MPSE-method	mp_cal_alpha-methods
mp_cal_alpha,tbl_mpse	mp_cal_alpha-methods
mp_cal_alpha,tbl_mpse-method	mp_cal_alpha-methods
mp_cal_cca	mp_cal_cca-methods
mp_cal_cca,grouped_df_mpse	mp_cal_cca-methods
mp_cal_cca,grouped_df_mpse-method	mp_cal_cca-methods
mp_cal_cca,MPSE	mp_cal_cca-methods
mp_cal_cca,MPSE-method	mp_cal_cca-methods
mp_cal_cca,tbl_mpse	mp_cal_cca-methods
mp_cal_cca,tbl_mpse-method	mp_cal_cca-methods
mp_cal_clust	mp_cal_clust-methods
mp_cal_clust,grouped_df_mpse	mp_cal_clust-methods
mp_cal_clust,grouped_df_mpse-method	mp_cal_clust-methods
mp_cal_clust,MPSE	mp_cal_clust-methods
mp_cal_clust,MPSE-method	mp_cal_clust-methods
mp_cal_clust,tbl_mpse	mp_cal_clust-methods
mp_cal_clust,tbl_mpse-method	mp_cal_clust-methods
mp_cal_dca	mp_cal_dca-methods
mp_cal_dca,grouped_df_mpse	mp_cal_dca-methods
mp_cal_dca,grouped_df_mpse-method	mp_cal_dca-methods
mp_cal_dca,MPSE	mp_cal_dca-methods
mp_cal_dca,MPSE-method	mp_cal_dca-methods
mp_cal_dca,tbl_mpse	mp_cal_dca-methods
mp_cal_dca,tbl_mpse-method	mp_cal_dca-methods
mp_cal_dist	mp_cal_dist-methods
mp_cal_dist,grouped_df_mpse	mp_cal_dist-methods
mp_cal_dist,grouped_df_mpse-method	mp_cal_dist-methods
mp_cal_dist,MPSE	mp_cal_dist-methods
mp_cal_dist,MPSE-method	mp_cal_dist-methods
mp_cal_dist,tbl_mpse	mp_cal_dist-methods
mp_cal_dist,tbl_mpse-method	mp_cal_dist-methods
mp_cal_divergence	mp_cal_divergence-methods
mp_cal_divergence,grouped_df_mpse	mp_cal_divergence-methods
mp_cal_divergence,grouped_df_mpse-method	mp_cal_divergence-methods
mp_cal_divergence,MPSE	mp_cal_divergence-methods
mp_cal_divergence,MPSE-method	mp_cal_divergence-methods
mp_cal_divergence,tbl_mpse	mp_cal_divergence-methods
mp_cal_divergence,tbl_mpse-method	mp_cal_divergence-methods
mp_cal_nmds	mp_cal_nmds-methods
mp_cal_nmds,grouped_df_mpse	mp_cal_nmds-methods
mp_cal_nmds,grouped_df_mpse-method	mp_cal_nmds-methods
mp_cal_nmds,MPSE	mp_cal_nmds-methods
mp_cal_nmds,MPSE-method	mp_cal_nmds-methods
mp_cal_nmds,tbl_mpse	mp_cal_nmds-methods
mp_cal_nmds,tbl_mpse-method	mp_cal_nmds-methods
mp_cal_pca	mp_cal_pca-methods
mp_cal_pca,grouped_df_mpse	mp_cal_pca-methods
mp_cal_pca,grouped_df_mpse-method	mp_cal_pca-methods
mp_cal_pca,MPSE	mp_cal_pca-methods
mp_cal_pca,MPSE-method	mp_cal_pca-methods
mp_cal_pca,tbl_mpse	mp_cal_pca-methods
mp_cal_pca,tbl_mpse-method	mp_cal_pca-methods
mp_cal_pcoa	mp_cal_pcoa-methods
mp_cal_pcoa,grouped_df_mpse	mp_cal_pcoa-methods
mp_cal_pcoa,grouped_df_mpse-method	mp_cal_pcoa-methods
mp_cal_pcoa,MPSE	mp_cal_pcoa-methods
mp_cal_pcoa,MPSE-method	mp_cal_pcoa-methods
mp_cal_pcoa,tbl_mpse	mp_cal_pcoa-methods
mp_cal_pcoa,tbl_mpse-method	mp_cal_pcoa-methods
mp_cal_pd_metric	mp_cal_pd_metric-methods
mp_cal_pd_metric,grouped_df_mpse	mp_cal_pd_metric-methods
mp_cal_pd_metric,grouped_df_mpse-method	mp_cal_pd_metric-methods
mp_cal_pd_metric,MPSE	mp_cal_pd_metric-methods
mp_cal_pd_metric,MPSE-method	mp_cal_pd_metric-methods
mp_cal_pd_metric,tbl_mpse	mp_cal_pd_metric-methods
mp_cal_pd_metric,tbl_mpse-method	mp_cal_pd_metric-methods
mp_cal_rarecurve	mp_cal_rarecurve-methods
mp_cal_rarecurve,grouped_df_mpse	mp_cal_rarecurve-methods
mp_cal_rarecurve,grouped_df_mpse-method	mp_cal_rarecurve-methods
mp_cal_rarecurve,MPSE	mp_cal_rarecurve-methods
mp_cal_rarecurve,MPSE-method	mp_cal_rarecurve-methods
mp_cal_rarecurve,tbl_mpse	mp_cal_rarecurve-methods
mp_cal_rarecurve,tbl_mpse-method	mp_cal_rarecurve-methods
mp_cal_rda	mp_cal_rda-methods
mp_cal_rda,grouped_df_mpse	mp_cal_rda-methods
mp_cal_rda,grouped_df_mpse-method	mp_cal_rda-methods
mp_cal_rda,MPSE	mp_cal_rda-methods
mp_cal_rda,MPSE-method	mp_cal_rda-methods
mp_cal_rda,tbl_mpse	mp_cal_rda-methods
mp_cal_rda,tbl_mpse-method	mp_cal_rda-methods
mp_cal_upset	mp_cal_upset-methods
mp_cal_upset,grouped_df_mpse	mp_cal_upset-methods
mp_cal_upset,grouped_df_mpse-method	mp_cal_upset-methods
mp_cal_upset,MPSE	mp_cal_upset-methods
mp_cal_upset,MPSE-method	mp_cal_upset-methods
mp_cal_upset,tbl_mpse	mp_cal_upset-methods
mp_cal_upset,tbl_mpse-method	mp_cal_upset-methods
mp_cal_venn	mp_cal_venn-methods
mp_cal_venn,grouped_df_mpse	mp_cal_venn-methods
mp_cal_venn,grouped_df_mpse-method	mp_cal_venn-methods
mp_cal_venn,MPSE	mp_cal_venn-methods
mp_cal_venn,MPSE-method	mp_cal_venn-methods
mp_cal_venn,tbl_mpse	mp_cal_venn-methods
mp_cal_venn,tbl_mpse-method	mp_cal_venn-methods
mp_decostand	mp_decostand-methods
mp_decostand,data.frame	mp_decostand-methods
mp_decostand,data.frame-method	mp_decostand-methods
mp_decostand,grouped_df_mpse	mp_decostand-methods
mp_decostand,grouped_df_mpse-method	mp_decostand-methods
mp_decostand,MPSE	mp_decostand-methods
mp_decostand,MPSE-method	mp_decostand-methods
mp_decostand,tbl_mpse	mp_decostand-methods
mp_decostand,tbl_mpse-method	mp_decostand-methods
mp_diff_analysis	mp_diff_analysis-methods
mp_diff_analysis,grouped_df_mpse	mp_diff_analysis-methods
mp_diff_analysis,grouped_df_mpse-method	mp_diff_analysis-methods
mp_diff_analysis,MPSE	mp_diff_analysis-methods
mp_diff_analysis,MPSE-method	mp_diff_analysis-methods
mp_diff_analysis,tbl_mpse	mp_diff_analysis-methods
mp_diff_analysis,tbl_mpse-method	mp_diff_analysis-methods
mp_diff_clade	mp_diff_clade-methods
mp_diff_clade,grouped_df_mpse	mp_diff_clade-methods
mp_diff_clade,grouped_df_mpse-method	mp_diff_clade-methods
mp_diff_clade,MPSE	mp_diff_clade-methods
mp_diff_clade,MPSE-method	mp_diff_clade-methods
mp_diff_clade,tbl_mpse	mp_diff_clade-methods
mp_diff_clade,tbl_mpse-method	mp_diff_clade-methods
mp_dmn	mp_dmn-methods
mp_dmn,grouped_df_mpse	mp_dmn-methods
mp_dmn,grouped_df_mpse-method	mp_dmn-methods
mp_dmn,MPSE	mp_dmn-methods
mp_dmn,MPSE-method	mp_dmn-methods
mp_dmn,tbl_mpse	mp_dmn-methods
mp_dmn,tbl_mpse-method	mp_dmn-methods
mp_dmngroup	mp_dmngroup-methods
mp_dmngroup,grouped_df_mpse	mp_dmngroup-methods
mp_dmngroup,grouped_df_mpse-method	mp_dmngroup-methods
mp_dmngroup,MPSE	mp_dmngroup-methods
mp_dmngroup,MPSE-method	mp_dmngroup-methods
mp_dmngroup,tbl_mpse	mp_dmngroup-methods
mp_dmngroup,tbl_mpse-method	mp_dmngroup-methods
mp_envfit	mp_envfit-methods
mp_envfit,grouped_df_mpse	mp_envfit-methods
mp_envfit,grouped_df_mpse-method	mp_envfit-methods
mp_envfit,MPSE	mp_envfit-methods
mp_envfit,MPSE-method	mp_envfit-methods
mp_envfit,tbl_mpse	mp_envfit-methods
mp_envfit,tbl_mpse-method	mp_envfit-methods
mp_extract_abundance	mp_extract_abundance-methods
mp_extract_abundance,grouped_df_mpse	mp_extract_abundance-methods
mp_extract_abundance,grouped_df_mpse-method	mp_extract_abundance-methods
mp_extract_abundance,MPSE	mp_extract_abundance-methods
mp_extract_abundance,MPSE-method	mp_extract_abundance-methods
mp_extract_abundance,tbl_mpse	mp_extract_abundance-methods
mp_extract_abundance,tbl_mpse-method	mp_extract_abundance-methods
mp_extract_assays	mp_extract_assays-methods
mp_extract_assays,grouped_df_mpse	mp_extract_assays-methods
mp_extract_assays,grouped_df_mpse-method	mp_extract_assays-methods
mp_extract_assays,MPSE	mp_extract_assays-methods
mp_extract_assays,MPSE-method	mp_extract_assays-methods
mp_extract_assays,tbl_mpse	mp_extract_assays-methods
mp_extract_assays,tbl_mpse-method	mp_extract_assays-methods
mp_extract_dist	mp_extract_dist-methods
mp_extract_dist,grouped_df_mpse	mp_extract_dist-methods
mp_extract_dist,grouped_df_mpse-method	mp_extract_dist-methods
mp_extract_dist,MPSE	mp_extract_dist-methods
mp_extract_dist,MPSE-method	mp_extract_dist-methods
mp_extract_dist,tbl_mpse	mp_extract_dist-methods
mp_extract_dist,tbl_mpse-method	mp_extract_dist-methods
mp_extract_feature	mp_extract_feature-methods
mp_extract_feature,grouped_df_mpse	mp_extract_feature-methods
mp_extract_feature,grouped_df_mpse-method	mp_extract_feature-methods
mp_extract_feature,MPSE	mp_extract_feature-methods
mp_extract_feature,MPSE-method	mp_extract_feature-methods
mp_extract_feature,tbl_mpse	mp_extract_feature-methods
mp_extract_feature,tbl_mpse-method	mp_extract_feature-methods
mp_extract_internal_attr	mp_extract_internal_attr-methods
mp_extract_internal_attr,grouped_df_mpse	mp_extract_internal_attr-methods
mp_extract_internal_attr,grouped_df_mpse-method	mp_extract_internal_attr-methods
mp_extract_internal_attr,MPSE	mp_extract_internal_attr-methods
mp_extract_internal_attr,MPSE-method	mp_extract_internal_attr-methods
mp_extract_internal_attr,tbl_mpse	mp_extract_internal_attr-methods
mp_extract_internal_attr,tbl_mpse-method	mp_extract_internal_attr-methods
mp_extract_otutree	mp_extract_tree-methods
mp_extract_rarecurve	mp_extract_rarecurve-methods
mp_extract_rarecurve,grouped_df_mpse	mp_extract_rarecurve-methods
mp_extract_rarecurve,grouped_df_mpse-method	mp_extract_rarecurve-methods
mp_extract_rarecurve,MPSE	mp_extract_rarecurve-methods
mp_extract_rarecurve,MPSE-method	mp_extract_rarecurve-methods
mp_extract_rarecurve,tbl_mpse	mp_extract_rarecurve-methods
mp_extract_rarecurve,tbl_mpse-method	mp_extract_rarecurve-methods
mp_extract_refseq	mp_extract_refseq-methods
mp_extract_refseq,grouped_df_mpse	mp_extract_refseq-methods
mp_extract_refseq,grouped_df_mpse-method	mp_extract_refseq-methods
mp_extract_refseq,MPSE	mp_extract_refseq-methods
mp_extract_refseq,MPSE-method	mp_extract_refseq-methods
mp_extract_refseq,tbl_mpse	mp_extract_refseq-methods
mp_extract_refseq,tbl_mpse-method	mp_extract_refseq-methods
mp_extract_sample	mp_extract_sample-methods
mp_extract_sample,grouped_df_mpse	mp_extract_sample-methods
mp_extract_sample,grouped_df_mpse-method	mp_extract_sample-methods
mp_extract_sample,MPSE	mp_extract_sample-methods
mp_extract_sample,MPSE-method	mp_extract_sample-methods
mp_extract_sample,tbl_mpse	mp_extract_sample-methods
mp_extract_sample,tbl_mpse-method	mp_extract_sample-methods
mp_extract_taxatree	mp_extract_tree-methods
mp_extract_taxonomy	mp_extract_taxonomy-methods
mp_extract_taxonomy,grouped_df_mpse	mp_extract_taxonomy-methods
mp_extract_taxonomy,grouped_df_mpse-method	mp_extract_taxonomy-methods
mp_extract_taxonomy,MPSE	mp_extract_taxonomy-methods
mp_extract_taxonomy,MPSE-method	mp_extract_taxonomy-methods
mp_extract_taxonomy,tbl_mpse	mp_extract_taxonomy-methods
mp_extract_taxonomy,tbl_mpse-method	mp_extract_taxonomy-methods
mp_extract_tree	mp_extract_tree-methods
mp_extract_tree,grouped_df_mpse	mp_extract_tree-methods
mp_extract_tree,grouped_df_mpse-method	mp_extract_tree-methods
mp_extract_tree,MPSE	mp_extract_tree-methods
mp_extract_tree,MPSE-method	mp_extract_tree-methods
mp_extract_tree,tbl_mpse	mp_extract_tree-methods
mp_extract_tree,tbl_mpse-method	mp_extract_tree-methods
mp_filter_taxa	mp_filter_taxa-methods
mp_filter_taxa,grouped_df_mpse	mp_filter_taxa-methods
mp_filter_taxa,grouped_df_mpse-method	mp_filter_taxa-methods
mp_filter_taxa,MPSE	mp_filter_taxa-methods
mp_filter_taxa,MPSE-method	mp_filter_taxa-methods
mp_filter_taxa,tbl_mpse	mp_filter_taxa-methods
mp_filter_taxa,tbl_mpse-method	mp_filter_taxa-methods
mp_fortify	mp_fortify
mp_import_biom	mp_import_biom
mp_import_dada2	ImportDada2
mp_import_metaphlan	mp_import_metaphlan
mp_import_qiime	mp_import_qiime
mp_import_qiime2	ImportQiime2
mp_mantel	mp_mantel-methods
mp_mantel,grouped_df_mpse	mp_mantel-methods
mp_mantel,grouped_df_mpse-method	mp_mantel-methods
mp_mantel,MPSE	mp_mantel-methods
mp_mantel,MPSE-method	mp_mantel-methods
mp_mantel,tbl_mpse	mp_mantel-methods
mp_mantel,tbl_mpse-method	mp_mantel-methods
mp_mrpp	mp_mrpp-methods
mp_mrpp,grouped_df_mpse	mp_mrpp-methods
mp_mrpp,grouped_df_mpse-method	mp_mrpp-methods
mp_mrpp,MPSE	mp_mrpp-methods
mp_mrpp,MPSE-method	mp_mrpp-methods
mp_mrpp,tbl_mpse	mp_mrpp-methods
mp_mrpp,tbl_mpse-method	mp_mrpp-methods
mp_plot_abundance	mp_plot_abundance-methods
mp_plot_abundance,grouped_df_mpse	mp_plot_abundance-methods
mp_plot_abundance,grouped_df_mpse-method	mp_plot_abundance-methods
mp_plot_abundance,MPSE	mp_plot_abundance-methods
mp_plot_abundance,MPSE-method	mp_plot_abundance-methods
mp_plot_abundance,tbl_mpse	mp_plot_abundance-methods
mp_plot_abundance,tbl_mpse-method	mp_plot_abundance-methods
mp_plot_alpha	mp_plot_alpha-methods
mp_plot_alpha,grouped_df_mpse	mp_plot_alpha-methods
mp_plot_alpha,grouped_df_mpse-method	mp_plot_alpha-methods
mp_plot_alpha,MPSE	mp_plot_alpha-methods
mp_plot_alpha,MPSE-method	mp_plot_alpha-methods
mp_plot_alpha,tbl_mpse	mp_plot_alpha-methods
mp_plot_alpha,tbl_mpse-method	mp_plot_alpha-methods
mp_plot_diff_boxplot	mp_plot_diff_boxplot-methods
mp_plot_diff_boxplot,grouped_df_mpse	mp_plot_diff_boxplot-methods
mp_plot_diff_boxplot,grouped_df_mpse-method	mp_plot_diff_boxplot-methods
mp_plot_diff_boxplot,MPSE	mp_plot_diff_boxplot-methods
mp_plot_diff_boxplot,MPSE-method	mp_plot_diff_boxplot-methods
mp_plot_diff_boxplot,tbl_mpse	mp_plot_diff_boxplot-methods
mp_plot_diff_boxplot,tbl_mpse-method	mp_plot_diff_boxplot-methods
mp_plot_diff_cladogram	mp_plot_diff_cladogram
mp_plot_diff_manhattan	mp_plot_diff_manhattan-methods
mp_plot_diff_manhattan,grouped_df_mpse	mp_plot_diff_manhattan-methods
mp_plot_diff_manhattan,grouped_df_mpse-method	mp_plot_diff_manhattan-methods
mp_plot_diff_manhattan,MPSE	mp_plot_diff_manhattan-methods
mp_plot_diff_manhattan,MPSE-method	mp_plot_diff_manhattan-methods
mp_plot_diff_manhattan,tbl_mpse	mp_plot_diff_manhattan-methods
mp_plot_diff_manhattan,tbl_mpse-method	mp_plot_diff_manhattan-methods
mp_plot_diff_res	mp_plot_diff_res-methods
mp_plot_diff_res,grouped_df_mpse	mp_plot_diff_res-methods
mp_plot_diff_res,grouped_df_mpse-method	mp_plot_diff_res-methods
mp_plot_diff_res,MPSE	mp_plot_diff_res-methods
mp_plot_diff_res,MPSE-method	mp_plot_diff_res-methods
mp_plot_diff_res,tbl_mpse	mp_plot_diff_res-methods
mp_plot_diff_res,tbl_mpse-method	mp_plot_diff_res-methods
mp_plot_dist	mp_plot_dist-methods
mp_plot_dist,grouped_df_mpse	mp_plot_dist-methods
mp_plot_dist,grouped_df_mpse-method	mp_plot_dist-methods
mp_plot_dist,MPSE	mp_plot_dist-methods
mp_plot_dist,MPSE-method	mp_plot_dist-methods
mp_plot_dist,tbl_mpse	mp_plot_dist-methods
mp_plot_dist,tbl_mpse-method	mp_plot_dist-methods
mp_plot_ord	mp_plot_ord-methods
mp_plot_ord,grouped_df_mpse	mp_plot_ord-methods
mp_plot_ord,grouped_df_mpse-method	mp_plot_ord-methods
mp_plot_ord,MPSE	mp_plot_ord-methods
mp_plot_ord,MPSE-method	mp_plot_ord-methods
mp_plot_ord,tbl_mpse	mp_plot_ord-methods
mp_plot_ord,tbl_mpse-method	mp_plot_ord-methods
mp_plot_rarecurve	mp_plot_rarecurve-methods
mp_plot_rarecurve,grouped_df_mpse-method	mp_plot_rarecurve-methods
mp_plot_rarecurve,grouped_tbl_mpse	mp_plot_rarecurve-methods
mp_plot_rarecurve,MPSE	mp_plot_rarecurve-methods
mp_plot_rarecurve,MPSE-method	mp_plot_rarecurve-methods
mp_plot_rarecurve,tbl_mpse	mp_plot_rarecurve-methods
mp_plot_rarecurve,tbl_mpse-method	mp_plot_rarecurve-methods
mp_plot_upset	mp_plot_upset-methods
mp_plot_upset,grouped_df_mpse	mp_plot_upset-methods
mp_plot_upset,grouped_df_mpse-method	mp_plot_upset-methods
mp_plot_upset,MPSE	mp_plot_upset-methods
mp_plot_upset,MPSE-method	mp_plot_upset-methods
mp_plot_upset,tbl_mpse	mp_plot_upset-methods
mp_plot_upset,tbl_mpse-method	mp_plot_upset-methods
mp_plot_venn	mp_plot_venn-methods
mp_plot_venn,grouped_df_mpse	mp_plot_venn-methods
mp_plot_venn,grouped_df_mpse-method	mp_plot_venn-methods
mp_plot_venn,MPSE	mp_plot_venn-methods
mp_plot_venn,MPSE-method	mp_plot_venn-methods
mp_plot_venn,tbl_mpse	mp_plot_venn-methods
mp_plot_venn,tbl_mpse-method	mp_plot_venn-methods
mp_rrarefy	mp_rrarefy-methods
mp_rrarefy,grouped_df_mpse	mp_rrarefy-methods
mp_rrarefy,grouped_df_mpse-method	mp_rrarefy-methods
mp_rrarefy,MPSE	mp_rrarefy-methods
mp_rrarefy,MPSE-method	mp_rrarefy-methods
mp_rrarefy,tbl_mpse	mp_rrarefy-methods
mp_rrarefy,tbl_mpse-method	mp_rrarefy-methods
mp_select_as_tip	mp_select_as_tip-methods
mp_select_as_tip,grouped_df_mpse	mp_select_as_tip-methods
mp_select_as_tip,grouped_df_mpse-method	mp_select_as_tip-methods
mp_select_as_tip,MPSE	mp_select_as_tip-methods
mp_select_as_tip,MPSE-method	mp_select_as_tip-methods
mp_select_as_tip,tbl_mpse	mp_select_as_tip-methods
mp_select_as_tip,tbl_mpse-method	mp_select_as_tip-methods
mp_stat_taxa	mp_stat_taxa-methods
mp_stat_taxa,grouped_df_mpse	mp_stat_taxa-methods
mp_stat_taxa,grouped_df_mpse-method	mp_stat_taxa-methods
mp_stat_taxa,MPSE	mp_stat_taxa-methods
mp_stat_taxa,MPSE-method	mp_stat_taxa-methods
mp_stat_taxa,tbl_mpse	mp_stat_taxa-methods
mp_stat_taxa,tbl_mpse-method	mp_stat_taxa-methods
multi_compare	multi_compare
mutate	reexports
nest	reexports
ordplotClass-class	ordplotClass-class
otutree	MPSE-accessors
otutree,group_df_mpse	MPSE-accessors
otutree,MPSE	MPSE-accessors
otutree,MPSE-method	MPSE-accessors
otutree,tbl_mpse	MPSE-accessors
otutree,tbl_mpse-method	MPSE-accessors
otutree<-	MPSE-accessors
otutree<-,grouped_df_mpse	MPSE-accessors
otutree<-,grouped_df_mpse,NULL-method	MPSE-accessors
otutree<-,grouped_df_mpse,treedata-method	MPSE-accessors
otutree<-,MPSE	MPSE-accessors
otutree<-,MPSE,NULL-method	MPSE-accessors
otutree<-,MPSE,phylo-method	MPSE-accessors
otutree<-,MPSE,treedata-method	MPSE-accessors
otutree<-,tbl_mpse	MPSE-accessors
otutree<-,tbl_mpse,NULL-method	MPSE-accessors
otutree<-,tbl_mpse,treedata-method	MPSE-accessors
pcasample-class	pcasample-class
pcoa-class	pcoa-class
prcomp-class	prcomp-class
print	print
print.grouped_df_mpse	print
print.MPSE	print
print.rarecurve	print
print.tbl_mpse	print
pull	reexports
read_qza	read_qza
reexports	reexports
refsequence	MPSE-accessors
refsequence,MPSE	MPSE-accessors
refsequence,MPSE-method	MPSE-accessors
refsequence<-	MPSE-accessors
refsequence<-,MPSE	MPSE-accessors
refsequence<-,MPSE,NULL-method	MPSE-accessors
refsequence<-,MPSE,XStringSet-method	MPSE-accessors
remove_missing	reexports
rename	reexports
rownames<-,MPSE	MPSE-accessors
rownames<-,MPSE-method	MPSE-accessors
scale_fill_diff_cladogram	scale_fill_diff_cladogram
select	reexports
set_diff_boxplot_color	set_diff_boxplot_color
set_scale_theme	set_scale_theme
show,alphasample-method	show-methods
show,diffAnalysisClass-method	show-methods
show,MPSE-method	show-methods
slice	reexports
split_data	split_data
split_str_to_list	split_str_to_list
taxatree	MPSE-accessors
taxatree,grouped_df_mpse	MPSE-accessors
taxatree,grouped_df_mpse-method	MPSE-accessors
taxatree,MPSE	MPSE-accessors
taxatree,MPSE-method	MPSE-accessors
taxatree,tbl_mpse	MPSE-accessors
taxatree,tbl_mpse-method	MPSE-accessors
taxatree<-	MPSE-accessors
taxatree<-,grouped_df_mpse	MPSE-accessors
taxatree<-,grouped_df_mpse,NULL-method	MPSE-accessors
taxatree<-,grouped_df_mpse,treedata-method	MPSE-accessors
taxatree<-,MPSE	MPSE-accessors
taxatree<-,MPSE,NULL-method	MPSE-accessors
taxatree<-,MPSE,treedata-method	MPSE-accessors
taxatree<-,tbl_mpse	MPSE-accessors
taxatree<-,tbl_mpse,NULL-method	MPSE-accessors
taxatree<-,tbl_mpse,treedata-method	MPSE-accessors
taxonomy	mp_extract_taxonomy-methods
taxonomy,grouped_df_mpse	mp_extract_taxonomy-methods
taxonomy,grouped_df_mpse-method	mp_extract_taxonomy-methods
taxonomy,MPSE	mp_extract_taxonomy-methods
taxonomy,MPSE-method	mp_extract_taxonomy-methods
taxonomy,tbl_mpse	mp_extract_taxonomy-methods
taxonomy,tbl_mpse-method	mp_extract_taxonomy-methods
taxonomy<-	MPSE-accessors
taxonomy<-,MPSE	MPSE-accessors
taxonomy<-,MPSE,data.frame-method	MPSE-accessors
taxonomy<-,MPSE,matrix-method	MPSE-accessors
taxonomy<-,MPSE,NULL-method	MPSE-accessors
taxonomy<-,MPSE,taxonomyTable-method	MPSE-accessors
tax_table	MPSE-accessors
tax_table,grouped_df_mpse	MPSE-accessors
tax_table,grouped_df_mpse-method	MPSE-accessors
tax_table,MPSE	MPSE-accessors
tax_table,MPSE-method	MPSE-accessors
tax_table,tbl_mpse	MPSE-accessors
tax_table,tbl_mpse-method	MPSE-accessors
td_filter	reexports
td_unnest	reexports
test_otu_data	data-test_otu_data
theme_stamp	theme_stamp
theme_taxbar	theme_taxbar
ungroup	reexports
unnest	reexports
[,MPSE,ANY,ANY,ANY-method	MPSE-accessors
