MSstatsShiny            MSstatsShiny: An R-shiny based package for
                        detecting differencially abundant proteins,
                        integrated with the MSstats family of packages.
QC_check                Quick QC value check
apply_adj               Main PTM adjustment function
dia_skyline_model       Example of Sklyine DDA dataset modeled using
                        MSstats 'groupComparison' function.
dia_skyline_summarized
                        Example of Sklyine DDA dataset processed using
                        MSstats summarization function.
example_dia_skyline     Example of input Sklyine DDA dataset.
example_skyline_annotation
                        Example annotation file
groupComparisonPlots2   Plotting funcitonality for QC plots
launch_MSstatsShiny     Run MSstatsShiny Application
lf_model                Main LF modeling function for MSstatsShiny
                        application
lf_summarization_loop   Main LF calculation summarization function for
                        MSstatsShiny application
radioTooltip            Custom function to create radio tool tips
tmt_model               Main TMT modeling function for MSstatsShiny
                        application
tmt_pd_model            Example of TMT dataset modeled using MSstatsTMT
                        'groupComparisonTMT' function.
tmt_pd_summarized       Example of TMT dataset processed using
                        MSstatsTMT summarization function.
tmt_summarization_loop
                        Main TMT summarization calculation function for
                        MSstatsShiny application
xy_str                  Simple function to return coordinates
