Package: MQmetrics
Type: Package
Title: Quality Control of Protemics Data
Version: 1.6.0
Authors@R: c(person(given = "Alvaro", family = "Sanchez-Villalba",
                    email = "sanchezvillalba.alvaro@gmail.com",
                    role = c("aut", "cre")),
            person(given = "Thomas", family = "Stehrer",
                    email = "thomas.stehrer@fgu.cas.cz",
                    role = "aut"),
            person(given = "Marek", family = "Vrbacky",
            email = "marek.vrbacky@fgu.cas.cz",
            role = "aut"))
Description: The package MQmetrics (MaxQuant metrics) provides a workflow to 
    analyze the quality and reproducibility of your proteomics mass spectrometry 
    analysis from MaxQuant.Input data are extracted from several MaxQuant output 
    tables and produces a pdf report. It includes several visualization tools to 
    check numerous parameters regarding the quality of the runs. It also 
    includes two functions to visualize the iRT peptides from Biognosys in case 
    they were spiked in the samples.
biocViews: Infrastructure, Proteomics, MassSpectrometry,
        QualityControl, DataImport
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.1.2
Imports: ggplot2, readr, magrittr, dplyr, purrr, reshape2, gridExtra,
        utils, stringr, ggpubr, stats, cowplot, RColorBrewer, tidyr,
        scales, grid, rlang, ggforce, grDevices, gtable, plyr, knitr,
        rmarkdown, ggrepel, gghalves, tools
VignetteBuilder: knitr
Suggests: testthat (>= 3.0.0), BiocStyle
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/MQmetrics
git_branch: RELEASE_3_16
git_last_commit: 1bc9b41
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-02 01:37:56 UTC; biocbuild
Author: Alvaro Sanchez-Villalba [aut, cre],
  Thomas Stehrer [aut],
  Marek Vrbacky [aut]
Maintainer: Alvaro Sanchez-Villalba <sanchezvillalba.alvaro@gmail.com>
Built: R 4.2.1; ; 2022-11-02 13:57:04 UTC; windows
