bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
97c1e27be12cbd2cbb45513e4d70bb90 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
952d208b5c7617259d5f62985d1ea93b *Meta/Rd.rds
88660eb02f69212ba08103a7da1e32a1 *Meta/features.rds
88f15e3c7a565882478f58505a63f5cf *Meta/hsearch.rds
b34b62c96687405b832300a78e74e7f2 *Meta/links.rds
0ef3b78d6a934435ea021ec8072a1fc4 *Meta/nsInfo.rds
09ca62a0f88d23bf69c42c1c4d94b424 *Meta/package.rds
2639f1863577b76b7428e4d91ec3a02d *Meta/vignette.rds
be218ab5f8593f82380357fb87629d5c *NAMESPACE
8359921f0533e5a037355a35c151a1e3 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
48889558d593531219004b54d8cb62e3 *R/GenomicAlignments.rdb
5954ff8e4d9a65074f2477a0ce599342 *R/GenomicAlignments.rdx
87c1aee70a53b2832ae0a7b1d1ea22d0 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
2f932071c6d4ee50623b70aff145bce6 *doc/GenomicAlignmentsIntroduction.pdf
0d307bd84b97e9958f7d683066cc6792 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
2ea717f07612e560139d9e659aa044e9 *doc/OverlapEncodings.pdf
fefe6ab83378e1021ae62b51ca854ef2 *doc/WorkingWithAlignedNucleotides.R
7ffa5eec2eb7b955ca22579bb869bff8 *doc/WorkingWithAlignedNucleotides.Rnw
032b284f7877db0c2f5dc91fd23390ee *doc/WorkingWithAlignedNucleotides.pdf
9d115c15a28049cb12fc89f67565a0c1 *doc/index.html
1c40ffe1d41ef7d3f3821184383ae85e *doc/summarizeOverlaps.R
5398e425480c1f764c0dce679bd32525 *doc/summarizeOverlaps.Rnw
94d39a0946033d4d98d6ba8e256cef16 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
9b75e3be5ca1e1838e23e9afc5de094b *help/AnIndex
10b31496e1df29fcb90e441531969f98 *help/GenomicAlignments.rdb
83dd4a3d83f6eafc785a249ad17c329f *help/GenomicAlignments.rdx
1e0d203e2ac92065a37c155cf353c2a5 *help/aliases.rds
e01a245c64a17d1a370036111b37e013 *help/paths.rds
2cf8f9ead33704c98f19d0107aabb574 *html/00Index.html
3845aef6126cf18c45937f292f23508c *html/R.css
788d67ec195dca5ece1fb3fd67a60d53 *libs/x64/GenomicAlignments.dll
22193c72fc07c32f876acee489f2ce96 *unitTests/test_GAlignments-class.R
b02dc164314a2514a39276e822352122 *unitTests/test_GAlignmentsList-class.R
8ebc949e316f84ed21c18fdf971de87f *unitTests/test_cigar-utils.R
1eec99e806cfe128483fd803bcfdd43f *unitTests/test_coordinate-mapping-methods.R
229bfd98328fafca3f1ad0a5e5e1d307 *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
8e3c3cb75da36b4ab3daa58c6b46bef7 *unitTests/test_readGAlignmentsList.R
3ee2246e46dee0999386dd9538c4a5cc *unitTests/test_summarizeOverlaps-methods.R
