add.row.to.meta	add.row.to.meta
add.row.to.meta,scCOTAN-method	add.row.to.meta
automatic.COTAN.object.creation	automatic.COTAN.object.creation
automatic.COTAN.object.creation,data.frame-method	automatic.COTAN.object.creation
clean	clean
clean,scCOTAN-method	clean
cotan_analysis	cotan_analysis
cotan_analysis,scCOTAN-method	cotan_analysis
drop.genes.cells	drop.genes.cells
drop.genes.cells,scCOTAN-method	drop.genes.cells
ERCC.cotan	ERCC.cotan
ERCCraw	ERCCraw
est.min.parameters	est.min.parameters
est.min.parameters,scCOTAN-method	est.min.parameters
extract.coex	extract.coex
extract.coex,scCOTAN-method	extract.coex
fun_linear	fun_linear
get.a	get.a
get.a,scCOTAN-method	get.a
get.cell.number	get.cell.number
get.cell.number,scCOTAN-method	get.cell.number
get.cell.size	get.cell.size
get.cell.size,scCOTAN-method	get.cell.size
get.coex	get.coex
get.coex,scCOTAN-method	get.coex
get.constitutive.genes	get.constitutive.genes
get.constitutive.genes,scCOTAN-method	get.constitutive.genes
get.expected.ct	get.expected.ct
get.expected.ct,scCOTAN-method	get.expected.ct
get.GDI	get.GDI
get.GDI,scCOTAN-method	get.GDI
get.gene.coexpression.space	get.gene.coexpression.space
get.gene.coexpression.space,scCOTAN-method	get.gene.coexpression.space
get.genes	get.genes
get.genes,scCOTAN-method	get.genes
get.lambda	get.lambda
get.lambda,scCOTAN-method	get.lambda
get.metadata	get.metadata
get.metadata,scCOTAN-method	get.metadata
get.normdata	get.normdata
get.normdata,scCOTAN-method	get.normdata
get.nu	get.nu
get.nu,scCOTAN-method	get.nu
get.observed.ct	get.observed.ct
get.observed.ct,scCOTAN-method	get.observed.ct
get.pval	get.pval
get.pval,scCOTAN-method	get.pval
get.rawdata	get.rawdata
get.rawdata,scCOTAN-method	get.rawdata
get.subset	get.subset
get.subset,scCOTAN-method	get.subset
initRaw	initRaw
initRaw,scCOTAN-method	initRaw
mat2vec_rfast	mat2vec_rfast
mat2vec_rfast,matrix-method	mat2vec_rfast
plot_GDI	plot_GDI
plot_GDI,scCOTAN-method	plot_GDI
plot_general.heatmap	plot_general.heatmap
plot_general.heatmap,ANY-method	plot_general.heatmap
plot_heatmap	plot_heatmap
plot_heatmap,ANY-method	plot_heatmap
raw.dataset	raw.dataset
scCOTAN	scCOTAN-class
scCOTAN-class	scCOTAN-class
vec2mat_rfast	vec2mat_rfast
vec2mat_rfast,list-method	vec2mat_rfast
