chr,posStart,posEnd,CN,Sample_ID,conf,numSNP,avgConf,length,CNV_type,method
22,15745226,15751560,3,NA12006,0,4,0,6335,Gain,PennCNV
22,17261770,17390149,3,NA12006,169.418,139,1.2188345323741,128380,Gain,PennCNV
22,36075946,36079559,1,NA12006,33.521,13,2.57853846153846,3614,Loss,PennCNV
22,48714735,48736422,1,NA12006,18.677,18,1.03761111111111,21688,Loss,PennCNV
22,21127655,21254995,3,NA11992,24.481,36,0.680027777777778,127341,Gain,PennCNV
22,21434769,21567586,0,NA11992,110.925,25,4.437,132818,Loss,PennCNV
22,37616345,37626450,3,NA11992,16.256,20,0.8128,10106,Gain,PennCNV
22,38458667,38565336,3,NA11992,19.984,59,0.33871186440678,106670,Gain,PennCNV
22,39548644,39589409,3,NA11992,15.889,25,0.63556,40766,Gain,PennCNV
22,39629939,39657824,3,NA11992,6.787,14,0.484785714285714,27886,Gain,PennCNV
22,46662382,46685897,3,NA11992,20.072,37,0.542486486486486,23516,Gain,PennCNV
22,46752107,46768943,3,NA11992,15.754,19,0.829157894736842,16837,Gain,PennCNV
14,18070480,18117862,3,NA11840,11.257,15,0.750466666666667,47383,Gain,PennCNV
14,19437451,19490178,3,NA11840,18.728,28,0.668857142857143,52728,Gain,PennCNV
14,72788632,72801066,1,NA11840,27.013,35,0.7718,12435,Loss,PennCNV
14,87461518,87492493,1,NA11840,135.183,44,3.07234090909091,30976,Loss,PennCNV
14,103635675,103637679,1,NA11840,16.849,6,2.80816666666667,2005,Loss,PennCNV
14,105100565,105114196,3,NA11840,6.245,10,0.6245,13632,Gain,PennCNV
22,18097722,18098733,1,NA12891,22.671,6,3.7785,1012,Loss,PennCNV
22,18515961,18548295,1,NA12891,27.613,42,0.657452380952381,32335,Loss,PennCNV
22,18598237,18615973,1,NA12891,27.086,21,1.28980952380952,17737,Loss,PennCNV
22,22507511,22521602,1,NA12891,22.756,27,0.842814814814815,14092,Loss,PennCNV
22,36358402,36359669,1,NA12891,17.144,7,2.44914285714286,1268,Loss,PennCNV
22,44879132,44890432,1,NA12891,23.106,24,0.96275,11301,Loss,PennCNV
22,45129040,45134075,1,NA12891,19.452,9,2.16133333333333,5036,Loss,PennCNV
22,47409585,47418219,1,NA12891,25.492,24,1.06216666666667,8635,Loss,PennCNV
22,47472858,47474444,1,NA12891,17.735,12,1.47791666666667,1587,Loss,PennCNV
22,47584706,47586831,1,NA12891,17.83,10,1.783,2126,Loss,PennCNV
22,47861228,47862905,1,NA12891,16.908,10,1.6908,1678,Loss,PennCNV
22,48714735,48747172,1,NA12891,29.512,30,0.983733333333333,32438,Loss,PennCNV
22,48811034,48815908,1,NA12891,20.854,11,1.89581818181818,4875,Loss,PennCNV
14,18527976,18540537,3,NA12005,9.201,5,1.8402,12562,Gain,PennCNV
14,105372700,105391051,0,NA12005,12.253,3,4.08433333333333,18352,Loss,PennCNV
14,105397668,106055196,3,NA12005,116.963,110,1.0633,657529,Gain,PennCNV
22,21127655,21254995,3,NA11843,16.369,36,0.454694444444444,127341,Gain,PennCNV
14,19417042,19453163,3,NA11881,17.028,16,1.06425,36122,Gain,PennCNV
14,76852887,76856905,1,NA11881,15.918,8,1.98975,4019,Loss,PennCNV
14,99263599,99275734,1,NA11881,18.183,17,1.06958823529412,12136,Loss,PennCNV
14,106045110,106060558,1,NA11881,9.655,9,1.07277777777778,15449,Loss,PennCNV
14,106068230,106111383,3,NA11881,11.086,42,0.263952380952381,43154,Gain,PennCNV
14,19267151,19494024,3,NA12004,88.9,65,1.36769230769231,226874,Gain,PennCNV
14,40679974,40726877,1,NA12004,58.159,28,2.07710714285714,46904,Loss,PennCNV
14,92261636,92262823,1,NA12004,12.053,3,4.01766666666667,1188,Loss,PennCNV
14,103722620,103727513,1,NA12004,17.864,7,2.552,4894,Loss,PennCNV
14,105582557,105587018,1,NA12004,11.864,3,3.95466666666667,4462,Loss,PennCNV
14,105716807,105937208,1,NA12004,125.914,57,2.20901754385965,220402,Loss,PennCNV
22,21261860,21302396,1,NA11918,12.297,13,0.945923076923077,40537,Loss,PennCNV
22,36073256,36079559,1,NA11918,39.072,16,2.442,6304,Loss,PennCNV
22,48714735,48736422,1,NA11918,30.191,18,1.67727777777778,21688,Loss,PennCNV
14,85355246,85389234,1,NA11919,48.469,27,1.79514814814815,33989,Loss,PennCNV
14,105819534,105845959,3,NA11919,12.099,13,0.930692307692308,26426,Gain,PennCNV
14,19267151,19494024,3,NA11893,71.106,65,1.09393846153846,226874,Gain,PennCNV
14,43786417,43788372,1,NA11893,15.975,6,2.6625,1956,Loss,PennCNV
14,105582557,105587018,0,NA11893,12.201,3,4.067,4462,Loss,PennCNV
14,105744785,105804088,0,NA11893,69.967,18,3.88705555555556,59304,Loss,PennCNV
14,105855885,106071713,3,NA11893,64.521,53,1.21737735849057,215829,Gain,PennCNV
22,20824864,20841719,3,NA12878,21.98,33,0.666060606060606,16856,Gain,PennCNV
22,20892562,20931293,1,NA12878,40.721,61,0.66755737704918,38732,Loss,PennCNV
22,21060265,21090100,1,NA12878,17.737,19,0.933526315789474,29836,Loss,PennCNV
22,21380265,21520370,1,NA12878,94.507,34,2.77961764705882,140106,Loss,PennCNV
22,21538274,21567586,0,NA12878,14.414,7,2.05914285714286,29313,Loss,PennCNV
14,19267151,19494024,3,NA12006,59.854,65,0.920830769230769,226874,Gain,PennCNV
14,40679974,40731435,1,NA12006,73.038,30,2.4346,51462,Loss,PennCNV
14,105758492,105845959,1,NA12006,42.159,33,1.27754545454545,87468,Loss,PennCNV
14,105899453,106111383,3,NA12006,57.846,85,0.680541176470588,211931,Gain,PennCNV
14,63026265,63032662,1,NA12003,28.092,10,2.8092,6398,Loss,PennCNV
14,105855885,106117470,3,NA12003,99.612,95,1.04854736842105,261586,Gain,PennCNV
14,18527976,18540537,3,NA11843,10.261,5,2.0522,12562,Gain,PennCNV
14,105452961,105744785,3,NA11843,18.667,21,0.888904761904762,291825,Gain,PennCNV
14,105934989,106215373,3,NA11843,83.879,157,0.534261146496815,280385,Gain,PennCNV
22,15485795,15498747,3,NA11919,7.016,6,1.16933333333333,12953,Gain,PennCNV
14,19294708,19417404,3,NA11993,17.024,21,0.810666666666667,122697,Gain,PennCNV
14,40679974,40731435,0,NA11993,147.155,30,4.90516666666667,51462,Loss,PennCNV
14,72597006,72600431,1,NA11993,20.479,6,3.41316666666667,3426,Loss,PennCNV
14,76855774,76856905,1,NA11993,15.839,5,3.1678,1132,Loss,PennCNV
14,105523735,106055196,3,NA11993,87.181,102,0.85471568627451,531462,Gain,PennCNV
22,21396679,21520370,3,NA11894,20.625,29,0.711206896551724,123692,Gain,PennCNV
22,23993994,24249492,3,NA11894,423.627,185,2.28987567567568,255499,Gain,PennCNV
22,39559095,39578484,3,NA11894,13.966,12,1.16383333333333,19390,Gain,PennCNV
22,46752107,46764685,3,NA11894,14.696,11,1.336,12579,Gain,PennCNV
22,15292556,15418910,3,NA11893,15.331,15,1.02206666666667,126355,Gain,PennCNV
22,20718006,21127655,1,NA11893,685.015,458,1.49566593886463,409650,Loss,PennCNV
22,41232222,41279977,3,NA11893,24.408,25,0.97632,47756,Gain,PennCNV
14,105765452,105847784,3,NA12878,36.33,32,1.1353125,82333,Gain,PennCNV
14,105866436,105887901,1,NA12878,7.106,3,2.36866666666667,21466,Loss,PennCNV
14,105899453,106106393,3,NA12878,28.466,75,0.379546666666667,206941,Gain,PennCNV
14,18527976,18540537,1,NA11894,15.57,5,3.114,12562,Loss,PennCNV
14,46778147,46785452,0,NA11894,47.976,9,5.33066666666667,7306,Loss,PennCNV
14,106213384,106250912,3,NA11894,23.123,21,1.10109523809524,37529,Gain,PennCNV
22,18238980,18243728,1,NA11840,22.11,7,3.15857142857143,4749,Loss,PennCNV
22,18330164,18338197,1,NA11840,23.567,33,0.714151515151515,8034,Loss,PennCNV
22,36070799,36079892,1,NA11840,50.304,21,2.39542857142857,9094,Loss,PennCNV
22,44705274,44707518,1,NA11840,20.368,10,2.0368,2245,Loss,PennCNV
22,44780045,44786379,1,NA11840,16.693,10,1.6693,6335,Loss,PennCNV
22,15292556,15381188,3,NA11994,0,8,0,88633,Gain,PennCNV
22,20890489,20923041,3,NA11994,41.298,50,0.82596,32553,Gain,PennCNV
22,21390352,21428373,3,NA11994,14.813,14,1.05807142857143,38022,Gain,PennCNV
22,21538274,21544004,1,NA11994,13.063,5,2.6126,5731,Loss,PennCNV
22,27805583,27811958,3,NA11994,18.102,6,3.017,6376,Gain,PennCNV
22,37618595,37628676,3,NA11994,12.267,15,0.8178,10082,Gain,PennCNV
22,38487197,38565336,3,NA11994,22.399,43,0.520906976744186,78140,Gain,PennCNV
22,20720868,21353446,1,NA12005,698.43,514,1.35881322957198,632579,Loss,PennCNV
22,21375605,21567586,0,NA12005,210.548,42,5.01304761904762,191982,Loss,PennCNV
22,44080396,44106445,1,NA12005,34.26,25,1.3704,26050,Loss,PennCNV
22,49082168,49089184,1,NA12005,19.258,6,3.20966666666667,7017,Loss,PennCNV
14,18293219,18373675,1,NA11892,12.885,8,1.610625,80457,Loss,PennCNV
14,18527976,18540537,3,NA11892,7.466,5,1.4932,12562,Gain,PennCNV
14,105795211,106086455,3,NA11892,75.288,81,0.929481481481481,291245,Gain,PennCNV
14,20523498,20529180,1,NA12891,18.377,10,1.8377,5683,Loss,PennCNV
14,22545793,22546584,1,NA12891,21.76,6,3.62666666666667,792,Loss,PennCNV
14,73309929,73315360,1,NA12891,17.03,8,2.12875,5432,Loss,PennCNV
14,93617231,93617414,1,NA12891,20.09,6,3.34833333333333,184,Loss,PennCNV
14,94354736,94356211,1,NA12891,9.569,5,1.9138,1476,Loss,PennCNV
14,99051768,99057599,1,NA12891,18.406,8,2.30075,5832,Loss,PennCNV
14,100074046,100108741,1,NA12891,21.923,41,0.534707317073171,34696,Loss,PennCNV
14,102620141,102646196,1,NA12891,29.604,37,0.800108108108108,26056,Loss,PennCNV
14,103234275,103238616,1,NA12891,19.989,16,1.2493125,4342,Loss,PennCNV
14,103679891,103714986,1,NA12891,76.853,66,1.16443939393939,35096,Loss,PennCNV
14,104248472,104252022,1,NA12891,22.97,11,2.08818181818182,3551,Loss,PennCNV
14,105100565,105114196,3,NA12891,3.548,10,0.3548,13632,Gain,PennCNV
14,105523735,106246842,3,NA12891,136.04,236,0.576440677966102,723108,Gain,PennCNV
14,103709104,103714529,1,NA11918,34.157,17,2.00923529411765,5426,Loss,PennCNV
14,105133720,105143515,1,NA11918,12.532,8,1.5665,9796,Loss,PennCNV
14,105174403,105246247,1,NA11918,13.282,16,0.830125,71845,Loss,PennCNV
14,105249724,105268160,0,NA11918,8.174,3,2.72466666666667,18437,Loss,PennCNV
14,105269079,105298364,1,NA11918,7.55,3,2.51666666666667,29286,Loss,PennCNV
14,105855885,105943859,3,NA11918,15.668,20,0.7834,87975,Gain,PennCNV
14,106013941,106102221,3,NA11918,23.896,44,0.543090909090909,88281,Gain,PennCNV
14,23523206,23534725,1,NA12892,20.203,14,1.44307142857143,11520,Loss,PennCNV
14,105165405,105198562,1,NA12892,14.767,7,2.10957142857143,33158,Loss,PennCNV
14,105245168,105268160,1,NA12892,16.936,6,2.82266666666667,22993,Loss,PennCNV
14,105795211,106104676,3,NA12892,55.877,105,0.532161904761905,309466,Gain,PennCNV
14,19267151,19528147,3,NA11994,85.9,83,1.03493975903614,260997,Gain,PennCNV
14,40679974,40731435,1,NA11994,40.288,30,1.34293333333333,51462,Loss,PennCNV
14,90326598,90336399,1,NA11994,19.684,18,1.09355555555556,9802,Loss,PennCNV
14,94644790,94688854,3,NA11994,16.285,25,0.6514,44065,Gain,PennCNV
14,100952291,100967399,3,NA11994,11.332,11,1.03018181818182,15109,Gain,PennCNV
14,105646659,106127399,3,NA11994,120.835,147,0.822006802721088,480741,Gain,PennCNV
14,18325726,18350733,1,NA11920,13.528,5,2.7056,25008,Loss,PennCNV
14,18527976,18853911,3,NA11920,4.276,7,0.610857142857143,325936,Gain,PennCNV
14,19267151,19417404,3,NA11920,37.743,28,1.34796428571429,150254,Gain,PennCNV
14,105133720,105246247,1,NA11920,71.082,32,2.2213125,112528,Loss,PennCNV
14,105249724,105268160,0,NA11920,13.83,3,4.61,18437,Loss,PennCNV
14,105269079,105391051,1,NA11920,21.377,6,3.56283333333333,121973,Loss,PennCNV
14,105582557,105658105,1,NA11920,14.852,7,2.12171428571429,75549,Loss,PennCNV
14,105721287,105781515,1,NA11920,27.911,12,2.32591666666667,60229,Loss,PennCNV
14,105855885,106111383,3,NA11920,71.971,92,0.78229347826087,255499,Gain,PennCNV
22,40630894,40654568,1,NA12004,14.115,17,0.830294117647059,23675,Loss,PennCNV
22,21060955,21288868,1,NA11993,61.579,77,0.799727272727273,227914,Loss,PennCNV
14,40679974,40726877,1,NA11992,29.595,28,1.05696428571429,46904,Loss,PennCNV
14,62118527,62131494,3,NA11992,27.134,36,0.753722222222222,12968,Gain,PennCNV
14,62152463,62154122,3,NA11992,13.815,19,0.727105263157895,1660,Gain,PennCNV
14,94657048,94688854,3,NA11992,10.724,14,0.766,31807,Gain,PennCNV
14,105372700,105391051,0,NA11992,12.557,3,4.18566666666667,18352,Loss,PennCNV
14,105452961,106313396,3,NA11992,248.032,292,0.849424657534247,860436,Gain,PennCNV
22,21380265,21412535,1,NA11931,39.339,14,2.80992857142857,32271,Loss,PennCNV
22,21413560,21434769,0,NA11931,5.621,3,1.87366666666667,21210,Loss,PennCNV
22,21436891,21567586,1,NA11931,67.114,24,2.79641666666667,130696,Loss,PennCNV
22,40852557,40861154,1,NA11931,19.195,10,1.9195,8598,Loss,PennCNV
14,18527976,18540537,3,NA11930,6.543,5,1.3086,12562,Gain,PennCNV
14,105372700,105391051,0,NA11930,12.406,3,4.13533333333333,18352,Loss,PennCNV
14,105855885,105887901,1,NA11930,23.004,7,3.28628571428571,32017,Loss,PennCNV
14,106144763,106273422,1,NA11930,33.945,97,0.349948453608247,128660,Loss,PennCNV
14,18527976,18540537,3,NA11995,9.761,5,1.9522,12562,Gain,PennCNV
14,40679974,40717238,1,NA11995,30.106,23,1.30895652173913,37265,Loss,PennCNV
14,62152243,62154057,3,NA11995,18.023,19,0.948578947368421,1815,Gain,PennCNV
14,105858421,106100913,3,NA11995,60.937,72,0.846347222222222,242493,Gain,PennCNV
22,15333204,15418910,3,NA12043,11.428,12,0.952333333333333,85707,Gain,PennCNV
22,21120692,21250212,3,NA11995,17.487,35,0.499628571428571,129521,Gain,PennCNV
22,24036442,24236930,1,NA11995,141.268,139,1.01631654676259,200489,Loss,PennCNV
22,37618595,37626450,3,NA11995,7.091,13,0.545461538461538,7856,Gain,PennCNV
22,38458667,38593943,3,NA11995,17.742,69,0.257130434782609,135277,Gain,PennCNV
22,15292556,15418910,3,NA11881,20.631,15,1.3754,126355,Gain,PennCNV
22,48714735,48736422,1,NA11881,26.071,18,1.44838888888889,21688,Loss,PennCNV
14,18527976,18540537,3,NA12043,9.563,5,1.9126,12562,Gain,PennCNV
14,19294708,19453163,3,NA12043,24.325,35,0.695,158456,Gain,PennCNV
14,40679974,40731435,1,NA12043,55.971,30,1.8657,51462,Loss,PennCNV
14,105523735,106111383,3,NA12043,95.203,146,0.652075342465753,587649,Gain,PennCNV
14,18070480,18091930,3,NA11931,10.27,9,1.14111111111111,21451,Gain,PennCNV
14,18527976,18540537,3,NA11931,6.053,5,1.2106,12562,Gain,PennCNV
14,25661020,25661921,0,NA11931,11.341,3,3.78033333333333,902,Loss,PennCNV
14,40679974,40731435,1,NA11931,50.564,30,1.68546666666667,51462,Loss,PennCNV
14,105391051,105542997,3,NA11931,13.532,11,1.23018181818182,151947,Gain,PennCNV
14,105899453,106127399,3,NA11931,50.414,91,0.554,227947,Gain,PennCNV
22,15292556,15418910,3,NA11892,11.492,15,0.766133333333333,126355,Gain,PennCNV
22,41248655,41279977,3,NA11892,21.228,13,1.63292307692308,31323,Gain,PennCNV
