ATACTransferLearning    Transfer Learning between ATACseq data sets
                        using projectR
RNAseqTFValidation      Validate TF Findings with RNA-seq CoGAPS
applyGREAT              Find Enrichment of GO Terms in PatternMarker
                        Peaks using GREAT
cgapsPlot               Plot Individual CoGAPS Patterns
dataSubsetBySparsity    Filter scATACseq by sparsity
exampleMotifList        Example list of motifs for examples
foldAccessibility       Estimate fold Accessibility of a Gene Relative
                        to Average
geneAccessibility       Find the accessibility of the peaks overlapping
                        a set of genes and their promoters
genePatternMatch        Match genes to pattern differentiating peaks
heatmapGeneAccessibility
                        Heatmap Gene Accessibility
heatmapPatternMarkers   Create Heatmap of PatternMarker Peaks
heatmapPatternMatrix    Plot the patternMatrix as a heatmap
motifPatternMatch       Find Motifs and TFs from PatternMarker Peaks
motifSummarization      Map Peaks to DNA motifs in scATAC-seq Data
pathwayMatch            Matches list of genes to pathways
patternMarkerCellClassifier
                        Match cells to patterns
peaksToGRanges          List of peaks to GRanges
schepCellTypes          Cell types corresponding to subsetSchepData
schepCogapsResult       CogapsResult from the subsetSchepData object
schepGranges            GRanges corresponding to subsetSchepData
schepPeaks              Peaks corresponding to subsetSchepData
simpleMotifTFMatch      Motif/TF Matching in a Single Function
subsetSchepData         Small subset of the scATAC-seq data from Schep
                        et al, 2017, Nature Methods paper.
tfData                  List of human TFs and motifs from cisBP
                        database
