Package: sSNAPPY
Title: Single Sample directioNAl Pathway Perturbation analYsis
Version: 1.2.5
Authors@R: 
    person("Wenjun", "Liu", , "wenjun.liu@adelaide.edu.au", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8185-3069"))
Description: A single sample pathway perturbation testing method for RNA-seq data. The method propagates changes in gene expression
             down gene-set topologies to compute single-sample directional pathway perturbation scores that reflect potential directions
             of changes.Perturbation scores can be used to test significance of pathway perturbation at both individual-sample and 
             treatment levels.  
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.2
Suggests: BiocManager, BiocStyle, cowplot, DT, htmltools, knitr,
        pander, rmarkdown, spelling, stringr, testthat (>= 3.0.0),
        tidyverse
Config/testthat/edition: 3
SystemRequirements: C++11
LazyData: false
Imports: dplyr, magrittr, rlang, stats, purrr, BiocParallel, graphite,
        Rcpp, tibble, ggplot2, ggraph, igraph, reshape2, org.Hs.eg.db,
        SummarizedExperiment, edgeR, methods, ggforce, ggnewscale,
        pheatmap, utils
LinkingTo: Rcpp, RcppArmadillo
Depends: R (>= 4.2.0)
biocViews: Software, GeneExpression, GeneSetEnrichment, GeneSignaling
URL: https://wenjun-liu.github.io/sSNAPPY/
VignetteBuilder: knitr
BugReports: https://github.com/Wenjun-Liu/sSNAPPY/issues
Language: en-US
git_url: https://git.bioconductor.org/packages/sSNAPPY
git_branch: RELEASE_3_16
git_last_commit: 483e456
git_last_commit_date: 2023-03-28
Date/Publication: 2023-03-29
NeedsCompilation: yes
Packaged: 2023-03-29 22:14:31 UTC; biocbuild
Author: Wenjun Liu [aut, cre] (<https://orcid.org/0000-0002-8185-3069>)
Maintainer: Wenjun Liu <wenjun.liu@adelaide.edu.au>
Built: R 4.2.3; x86_64-apple-darwin17.0; 2023-03-30 04:05:04 UTC; unix
