clustifyr-package	clustifyr-package
append_genes	append_genes
assess_rank_bias	assess_rank_bias
assign_ident	assign_ident
average_clusters	average_clusters
binarize_expr	binarize_expr
build_atlas	build_atlas
calculate_pathway_gsea	calculate_pathway_gsea
calc_distance	calc_distance
calc_similarity	calc_similarity
call_consensus	call_consensus
call_to_metadata	call_to_metadata
cbmc_m	cbmc_m
cbmc_ref	cbmc_ref
check_raw_counts	check_raw_counts
clustify	clustify
clustify.default	clustify
clustify.Seurat	clustify
clustify.SingleCellExperiment	clustify
clustifyr_methods	clustifyr_methods
clustify_lists	clustify_lists
clustify_lists.default	clustify_lists
clustify_lists.Seurat	clustify_lists
clustify_lists.SingleCellExperiment	clustify_lists
clustify_nudge	clustify_nudge
clustify_nudge.default	clustify_nudge
clustify_nudge.Seurat	clustify_nudge
collapse_to_cluster	collapse_to_cluster
compare_lists	compare_lists
cor_to_call	cor_to_call
cor_to_call_rank	cor_to_call_rank
cor_to_call_topn	cor_to_call_topn
cosine	cosine
downrefs	downrefs
downsample_matrix	downsample_matrix
feature_select_PCA	feature_select_PCA
file_marker_parse	file_marker_parse
find_rank_bias	find_rank_bias
gene_pct	gene_pct
gene_pct_markerm	gene_pct_markerm
get_best_match_matrix	get_best_match_matrix
get_best_str	get_best_str
get_common_elements	get_common_elements
get_similarity	get_similarity
get_ucsc_reference	get_ucsc_reference
get_unique_column	get_unique_column
get_vargenes	get_vargenes
gmt_to_list	gmt_to_list
human_genes_10x	human_genes_10x
insert_meta_object	insert_meta_object
kl_divergence	kl_divergence
make_comb_ref	make_comb_ref
marker_select	marker_select
matrixize_markers	matrixize_markers
mouse_genes_10x	mouse_genes_10x
not_pretty_palette	not_pretty_palette
object_data	object_data
object_data.Seurat	object_data
object_data.SingleCellExperiment	object_data
object_loc_lookup	object_loc_lookup
object_ref	object_ref
object_ref.default	object_ref
object_ref.Seurat	object_ref
object_ref.SingleCellExperiment	object_ref
overcluster	overcluster
overcluster_test	overcluster_test
parse_loc_object	parse_loc_object
pbmc_markers	pbmc_markers
pbmc_markers_M3Drop	pbmc_markers_M3Drop
pbmc_matrix_small	pbmc_matrix_small
pbmc_meta	pbmc_meta
pbmc_vargenes	pbmc_vargenes
percent_clusters	percent_clusters
permute_similarity	permute_similarity
plot_best_call	plot_best_call
plot_call	plot_call
plot_cor	plot_cor
plot_cor_heatmap	plot_cor_heatmap
plot_dims	plot_dims
plot_gene	plot_gene
plot_pathway_gsea	plot_pathway_gsea
plot_rank_bias	plot_rank_bias
pos_neg_marker	pos_neg_marker
pos_neg_select	pos_neg_select
pretty_palette	pretty_palette
pretty_palette2	pretty_palette2
pretty_palette_ramp_d	pretty_palette_ramp_d
query_rank_bias	query_rank_bias
ref_feature_select	ref_feature_select
ref_marker_select	ref_marker_select
reverse_marker_matrix	reverse_marker_matrix
run_clustifyr_app	run_clustifyr_app
run_gsea	run_gsea
sce_small	sce_small
seurat_meta	seurat_meta
seurat_meta.Seurat	seurat_meta
seurat_ref	seurat_ref
seurat_ref.Seurat	seurat_ref
s_small	s_small
s_small3	s_small3
vector_similarity	vector_similarity
write_meta	write_meta
write_meta.Seurat	write_meta
write_meta.SingleCellExperiment	write_meta
_PACKAGE	clustifyr-package
