# An R package estimates the correlations of orthologs and transposable elements between two species

## Documentation for package ‘TEKRABber’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

appTEKRABber | Visualize TEKRABber results with shiny app
assay_tekcorrset | Access genes and transposable elements expression data
corrOrthologTE | Estimate correlation comparing orthologs and TEs
ctCorr | Normalized Gene/TE expression toy data in control and treatment in same species for correlation analysis
ctInputDE | Input expression data of gene/TE for differentially expressed analysis within same species
DECorrInputs | Generate all the input files for TEKRABber downstream analysis
DEgeneTE | Estimate differentially expressed genes and TEs
fetchDataHmChimp | Orthology information of human and chimpanzee with scaling factor
orthologScale | Get orthology information from Ensembl
rcpp_corr | Estimate the correlation between genes and transposable elements
speciesCorr | A subsets of normalized Gene/TE expression data from human/chimpanzee brain RNA-seq for correlation analysis demonstration
speciesCounts | Gene/TE expression data from human/chimpanzee brain RNA-seq
TEKRABber | An R package estimates the correlations of orthologs and transposable elements between two species