Package: SBGNview
Title: "SBGNview: Data Analysis, Integration and Visualization on SBGN
        Pathways"
Description: 
   SBGNview is a tool set for pathway based data visalization,
   integration and analysis. SBGNview is similar and complementary to
   the widely used Pathview, with the following key features:
   1. Pathway definition by the widely adopted Systems Biology
   Graphical Notation (SBGN); 2. Supports multiple major pathway
   databases beyond KEGG (Reactome, MetaCyc, SMPDB, PANTHER, METACROP)
   and user defined pathways; 3. Covers 5,200 reference pathways and
   over 3,000 species by default; 4. Extensive graphics controls,
   including glyph and edge attributes, graph layout and sub-pathway
   highlight; 5. SBGN pathway data manipulation, processing,
   extraction and analysis.
Version: 1.12.0
Author: 
    Xiaoxi Dong*, Kovidh Vegesna*, Weijun Luo
Maintainer: Weijun Luo <luo_weijun@yahoo.com>
Depends: R (>= 3.6), pathview, SBGNview.data
Imports: Rdpack, grDevices, methods, stats, utils, xml2, rsvg, igraph,
        rmarkdown, knitr, SummarizedExperiment, AnnotationDbi, httr,
        KEGGREST, bookdown
RdMacros: Rdpack
License: AGPL-3
LazyData: FALSE
Collate: SBGN.to.SVG.R SBGNview.R SBGNview.obj.fun.R color.panel.R
        data.R download.utilities.R highlight.utilities.R
        mapping.utilities.R parsing.utilities.R plot.utilities.R zzz.R
RoxygenNote: 7.1.1
Suggests: testthat, gage
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: GeneTarget, Pathways, GraphAndNetwork, Visualization,
        GeneSetEnrichment, DifferentialExpression, GeneExpression,
        Microarray, RNASeq, Genetics, Metabolomics, Proteomics,
        SystemsBiology, Sequencing, GeneTarget
URL: https://github.com/datapplab/SBGNview
BugReports: https://github.com/datapplab/SBGNview/issues
git_url: https://git.bioconductor.org/packages/SBGNview
git_branch: RELEASE_3_16
git_last_commit: 688ec84
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 22:53:52 UTC; biocbuild
Built: R 4.2.1; ; 2022-11-02 04:48:25 UTC; unix
