# Integrating Multi-Omic Network Data With Summay-Level GWAS Data

## Documentation for package ‘PanViz’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

adjl_to_G | adj_to_G
adjl_to_G_grouped | adjl_to_G_grouped
adj_list_to_igraph | adj_list_to_igraph
colour_IMON | colour network by categorical group levels
dbSNP_query_check | dbSNP_query_check
dbSNP_query_clean | dbSNP query clean up function
decompose_IMON | decompose_IMON
ego_IMON | ego_IMON
er_snp_vector | Summary-level GWAS data vector for estrogen-receptor positive breast cancer (EFO_1000649)
get_grouped_IMON | get IMON with SNP and or all network vertices coloured by group variables (either studies or phenotypes)
get_IMON | get_IMON
GWAS_data_reader | GWAS_data_reader
multi_hex_col_mix | multi_hex_col_mix
NCBI_clean | NCBI_clean
NCBI_clean_2 | NCBI_clean_2
NCBI_dbSNP_query | NCBI_dbSNP_query
reaction_cleanup | reaction_cleanup
retry | Retry function
set_base_graph_attributes | set_base_graph_attributes
set_snp_grouping | snp grouping by chosen categorical variable
snp_gene_chr_match | snp_gene_chr_match
snp_gene_map | Fast vectorised SNP to gene chromosome number and genomic location mapping