Package: MsBackendRawFileReader
Type: Package
Title: Mass Spectrometry Backend for Reading Thermo Fisher Scientific
        raw Files
Version: 1.4.0
Authors@R: c(person(given = "Christian",
    family = "Panse", email = "cp@fgcz.ethz.ch", role = c("aut", "cre"),
    comment = c(ORCID = "0000-0003-1975-3064")),
	person(given = "Tobias", family = "Kockmann",
	  email = "Tobias.Kockmann@fgcz.ethz.ch", role = "aut", 
    comment = c(ORCID = "0000-0002-1847-885X")))
Depends: R (>= 4.1), methods, Spectra (>= 1.5.8)
Imports: MsCoreUtils, S4Vectors, IRanges, rawrr (>= 1.3.6), utils,
        BiocParallel
Suggests: BiocStyle (>= 2.5), ExperimentHub, MsBackendMgf, knitr,
        lattice, mzR, protViz (>= 0.7), rmarkdown, tartare (>= 1.5),
        testthat
Description: implements a MsBackend for the Spectra package using
  Thermo Fisher Scientific's NewRawFileReader .Net libraries.
  The package is generalizing the functionality introduced by the rawrr package
  (Kockmann T. et al. (2020) <doi:10.1101/2020.10.30.362533>)
  Methods defined in this package are supposed to extend the Spectra
  Bioconductor package. 
URL: https://github.com/fgcz/MsBackendRawFileReader
BugReports: https://github.com/fgcz/MsBackendRawFileReader/issues
Encoding: UTF-8
NeedsCompilation: yes
biocViews: MassSpectrometry, Proteomics, Metabolomics
RoxygenNote: 7.1.2
License: GPL-3
SystemRequirements: mono-runtime 4.x or higher (including System.Data
        library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft
        Windows.
VignetteBuilder: knitr
Collate: 'hidden_aliases.R' 'AllGenerics.R'
        'MsBackendRawFileReader-functions.R' 'MsBackendRawFileReader.R'
        'benchmark.R' 'zzz.R'
git_url: https://git.bioconductor.org/packages/MsBackendRawFileReader
git_branch: RELEASE_3_16
git_last_commit: 3cffb45
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
Packaged: 2022-11-01 22:17:53 UTC; biocbuild
Author: Christian Panse [aut, cre] (<https://orcid.org/0000-0003-1975-3064>),
  Tobias Kockmann [aut] (<https://orcid.org/0000-0002-1847-885X>)
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Built: R 4.2.1; ; 2022-11-02 04:39:19 UTC; unix
