spatialDmelxsim

DOI: 10.18129/B9.bioc.spatialDmelxsim    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see spatialDmelxsim.

Spatial allelic expression counts for fly cross embryo

Bioconductor version: 3.15

Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.

Author: Michael Love [aut, cre]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spatialDmelxsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spatialDmelxsim")

 

HTML	R Script	spatialDmelxsim
PDF		Reference Manual
Text		NEWS

Details

biocViews	Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, GEO, RNASeqData, SequencingData
Version	1.2.0
License	GPL-3
Depends	R (>= 4.1), ExperimentHub, SummarizedExperiment
Imports	utils
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/mikelove/spatialDmelxsim
BugReports	https://github.com/mikelove/spatialDmelxsim/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	spatialDmelxsim_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/spatialDmelxsim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spatialDmelxsim
Package Short Url	https://bioconductor.org/packages/spatialDmelxsim/
Package Downloads Report	Download Stats