TabulaMurisSenisData

DOI: 10.18129/B9.bioc.TabulaMurisSenisData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TabulaMurisSenisData.

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

Bioconductor version: 3.15

This package provides access to RNA-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing, collected in the form of SingleCellExperiment objects.

Author: Charlotte Soneson [aut, cre] , Dania Machlab [aut] , Federico Marini [aut] , Stefania Astrologo [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TabulaMurisSenisData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TabulaMurisSenisData")

 

HTML	R Script	TabulaMurisSenisData
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, RNASeqData, SingleCellData
Version	1.2.0
License	MIT + file LICENSE
Depends
Imports	ExperimentHub, SingleCellExperiment, HDF5Array, SummarizedExperiment, gdata, AnnotationHub
LinkingTo
Suggests	ggplot2, testthat, knitr, rmarkdown, iSEE, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/fmicompbio/TabulaMurisSenisData
BugReports	https://github.com/fmicompbio/TabulaMurisSenisData/issues
Depends On Me
Imports Me
Suggests Me	SPOTlight
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TabulaMurisSenisData_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/TabulaMurisSenisData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TabulaMurisSenisData
Package Short Url	https://bioconductor.org/packages/TabulaMurisSenisData/
Package Downloads Report	Download Stats