TENxVisiumData

DOI: 10.18129/B9.bioc.TENxVisiumData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TENxVisiumData.

Visium spatial gene expression data by 10X Genomics

Bioconductor version: 3.15

Collection of Visium spatial gene expression datasets by 10X Genomics, formatted into objects of class SpatialExperiment. Data cover various organisms and tissues, and include: single- and multi-section experiments, as well as single sections subjected to both whole transcriptome and targeted panel analysis. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena at crowell.eu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxVisiumData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxVisiumData")

 

HTML	R Script	TENxVisiumData
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch
Version	1.4.0
License	MIT + file LICENSE
Depends	ExperimentHub, SpatialExperiment
Imports	utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/helenalc/TENxVisiumData
BugReports	https://github.com/helenalc/TENxVisiumData/issues
Depends On Me
Imports Me
Suggests Me	SPOTlight
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TENxVisiumData_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/TENxVisiumData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENxVisiumData
Package Short Url	https://bioconductor.org/packages/TENxVisiumData/
Package Downloads Report	Download Stats