MetaGxPancreas

DOI: 10.18129/B9.bioc.MetaGxPancreas    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see MetaGxPancreas.

Transcriptomic Pancreatic Cancer Datasets

Bioconductor version: 3.15

A collection of pancreatic Cancer transcriptomic datasets that are part of the MetaGxData package compendium. This package contains multiple pancreas cancer datasets that have been downloaded from various resources and turned into SummarizedExperiment objects. The details of how the authors normalized the data can be found in the experiment data section of the objects. Additionally, the location the data was obtained from can be found in the url variables of the experiment data portion of each SE.

Author: Michael Zon [aut], Vandana Sandhu [aut], Christopher Eeles [ctb], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaGxPancreas")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaGxPancreas")

 

HTML	R Script	MetaGxPancreas: A Package for Pancreatic Cancer Gene Expression Analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	ArrayExpress, CancerData, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, NCI, SequencingData
Version	1.16.0
License	Artistic-2.0
Depends	SummarizedExperiment, ExperimentHub, R (>= 3.6.0)
Imports	stats, impute, S4Vectors, AnnotationHub
LinkingTo
Suggests	testthat, knitr, BiocStyle, rmarkdown, markdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MetaGxPancreas_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/MetaGxPancreas
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MetaGxPancreas
Package Short Url	https://bioconductor.org/packages/MetaGxPancreas/
Package Downloads Report	Download Stats