GSE159526

DOI: 10.18129/B9.bioc.GSE159526    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see GSE159526.

Placental cell DNA methylation data from GEO accession GSE159526

Bioconductor version: 3.15

19 term and 9 first trimester placental chorionic villi and matched cell-sorted samples ran on Illumina HumanMethylationEPIC DNA methylation microarrays. This data was made available on GEO accession [GSE159526](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159526). Both the raw and processed data has been made available on \code{ExperimentHub}. Raw unprocessed data formatted as an RGChannelSet object for integration and normalization using minfi and other existing Bioconductor packages. Processed normalized data is also available as a DNA methylation \code{matrix}, with a corresponding phenotype information as a \code{data.frame} object.

Author: Victor Yuan [aut, cre]

Maintainer: Victor Yuan <victor.2wy at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSE159526")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSE159526")

 

HTML	R Script	Introduction to GSE159526
PDF		Reference Manual
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, GEO, Genome, Homo_sapiens_Data, MethylationArrayData, Tissue
Version	1.2.0
License	MIT + file LICENSE
Depends
Imports
LinkingTo
Suggests	ExperimentHub, BiocStyle, RefManageR, knitr, rmarkdown, testthat, minfi, tibble, sessioninfo
SystemRequirements
Enhances
URL	https://github.com/wvictor14/GSE159526
BugReports	https://github.com/wvictor14/GSE159526/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSE159526_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/GSE159526
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GSE159526
Package Short Url	https://bioconductor.org/packages/GSE159526/
Package Downloads Report	Download Stats