DREAM4

DOI: 10.18129/B9.bioc.DREAM4    

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DREAM4.

Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge

Bioconductor version: 3.15

Simulated expression data for five 10-node, and five 100-node networks, with associated data (including solutions) from the 2009 DREAM4 challenge.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DREAM4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DREAM4")

 

PDF	R Script	DREAM4 Overview
PDF		DREAM4_InSilico_Description.pdf
PDF		Reference Manual

Details

biocViews	ExperimentData, Genome, Saccharomyces_cerevisiae_Data, SequencingData
Version	1.31.0
License	GPL
Depends	R (>= 2.15.1), SummarizedExperiment
Imports
LinkingTo
Suggests	RUnit, networkBMA
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DREAM4_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/DREAM4
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DREAM4
Package Short Url	https://bioconductor.org/packages/DREAM4/
Package Downloads Report	Download Stats