rebook

DOI: 10.18129/B9.bioc.rebook    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see rebook.

Re-using Content in Bioconductor Books

Bioconductor version: 3.15

Provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rebook")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rebook")

 

HTML	R Script	Reusing book content
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, ReportWriting, Software
Version	1.6.0
In Bioconductor since	BioC 3.12 (R-4.0) (2 years)
License	GPL-3
Depends
Imports	utils, methods, knitr (>= 1.32), rmarkdown, CodeDepends, dir.expiry, filelock, BiocStyle
LinkingTo
Suggests	testthat, igraph, XML, BiocManager, RCurl, bookdown, rappdirs, yaml, BiocParallel, OSCA.intro, OSCA.workflows
SystemRequirements
Enhances
URL
Depends On Me	csawBook, OSCA, OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows
Imports Me
Suggests Me	SingleRBook
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rebook_1.6.0.tar.gz
Windows Binary	rebook_1.6.0.zip
macOS Binary (x86_64)	rebook_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rebook
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rebook
Package Short Url	https://bioconductor.org/packages/rebook/
Package Downloads Report	Download Stats