rDGIdb

DOI: 10.18129/B9.bioc.rDGIdb    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see rDGIdb.

R Wrapper for DGIdb

Bioconductor version: 3.15

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (https://www.dgidb.org/).

Author: Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel

Maintainer: Lars Bosshard <bosshard at nexus.ethz.ch>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rDGIdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rDGIdb")

 

PDF	R Script	Query DGIdb using R
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Annotation, FunctionalGenomics, Pharmacogenetics, Pharmacogenomics, ResearchField, Software, WorkflowStep
Version	1.22.0
In Bioconductor since	BioC 3.4 (R-3.3) (6 years)
License	MIT + file LICENSE
Depends
Imports	jsonlite, httr, methods, graphics
LinkingTo
Suggests	BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rDGIdb_1.22.0.tar.gz
Windows Binary	rDGIdb_1.22.0.zip
macOS Binary (x86_64)	rDGIdb_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rDGIdb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rDGIdb
Package Short Url	https://bioconductor.org/packages/rDGIdb/
Package Downloads Report	Download Stats