ndexr

DOI: 10.18129/B9.bioc.ndexr    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ndexr.

NDEx R client library

Bioconductor version: 3.15

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer <florian.auer at informatik.uni-augsburg.de>, Frank Kramer <frank.kramer at informatik.uni-augsburg.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")

 

HTML	R Script	NDExR Vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Network, Pathways, Software
Version	1.18.0
In Bioconductor since	BioC 3.6 (R-3.4) (5 years)
License	BSD_3_clause
Depends	igraph, RCX
Imports	httr, jsonlite, plyr, tidyr
LinkingTo
Suggests	BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/frankkramer-lab/ndexr
BugReports	https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me
Suggests Me	netgsa
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ndexr_1.18.0.tar.gz
Windows Binary	ndexr_1.18.0.zip (64-bit only)
macOS Binary (x86_64)	ndexr_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ndexr
Package Short Url	https://bioconductor.org/packages/ndexr/
Package Downloads Report	Download Stats