logicFS

DOI: 10.18129/B9.bioc.logicFS    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see logicFS.

Identification of SNP Interactions

Bioconductor version: 3.15

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

Author: Holger Schwender, Tobias Tietz

Maintainer: Holger Schwender <holger.schw at gmx.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("logicFS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logicFS")

 

PDF	R Script	logicFS Manual
PDF		Reference Manual

Details

biocViews	Classification, Genetics, SNP, Software
Version	2.16.0
In Bioconductor since	BioC 1.8 (R-2.3) (16.5 years)
License	LGPL (>= 2)
Depends	LogicReg, mcbiopi, survival
Imports	graphics, methods, stats
LinkingTo
Suggests	genefilter, siggenes
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	trio
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	logicFS_2.16.0.tar.gz
Windows Binary	logicFS_2.16.0.zip
macOS Binary (x86_64)	logicFS_2.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/logicFS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/logicFS
Package Short Url	https://bioconductor.org/packages/logicFS/
Package Downloads Report	Download Stats