biodbHmdb

DOI: 10.18129/B9.bioc.biodbHmdb    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see biodbHmdb.

biodbHmdb, a library for connecting to the HMDB Database

Bioconductor version: 3.15

The biodbHmdb library is an extension of the biodb framework package that provides access to the HMDB Metabolites database. It allows to download the whole HMDB Metabolites database locally, access entries and search for entries by name or description. A future version of this package will also include a search by mass and mass spectra annotation.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbHmdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbHmdb")

 

HTML	R Script	Introduction to the biodbHmdb package.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	1.2.0
In Bioconductor since	BioC 3.14 (R-4.1) (1 year)
License	AGPL-3
Depends	R (>= 4.1)
Imports	R6, biodb(>= 1.3.2), Rcpp
LinkingTo	Rcpp, testthat
Suggests	BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, covr, lgr
SystemRequirements
Enhances
URL	https://github.com/pkrog/biodbHmdb
BugReports	https://github.com/pkrog/biodbHmdb/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biodbHmdb_1.2.0.tar.gz
Windows Binary	biodbHmdb_1.2.0.zip (64-bit only)
macOS Binary (x86_64)	biodbHmdb_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biodbHmdb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biodbHmdb
Package Short Url	https://bioconductor.org/packages/biodbHmdb/
Package Downloads Report	Download Stats