apComplex

DOI: 10.18129/B9.bioc.apComplex    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see apComplex.

Estimate protein complex membership using AP-MS protein data

Bioconductor version: 3.15

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Author: Denise Scholtens <dscholtens at northwestern.edu>

Maintainer: Denise Scholtens <dscholtens at northwestern.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("apComplex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("apComplex")

 

PDF	R Script	apComplex
PDF		Reference Manual

Details

biocViews	GraphAndNetwork, ImmunoOncology, MassSpectrometry, NetworkInference, Software
Version	2.62.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 17.5 years)
License	LGPL
Depends	R (>= 2.10), graph, RBGL
Imports	Rgraphviz, stats, org.Sc.sgd.db
LinkingTo
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Depends On Me	ScISI
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	apComplex_2.62.0.tar.gz
Windows Binary	apComplex_2.62.0.zip
macOS Binary (x86_64)	apComplex_2.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/apComplex
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/apComplex
Package Short Url	https://bioconductor.org/packages/apComplex/
Package Downloads Report	Download Stats