TileDBArray

DOI: 10.18129/B9.bioc.TileDBArray    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TileDBArray.

Using TileDB as a DelayedArray Backend

Bioconductor version: 3.15

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Author: Aaron Lun [aut, cre], Genentech, Inc. [cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TileDBArray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TileDBArray")

 

HTML	R Script	User guide
PDF		Reference Manual
Text		LICENSE

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	1.6.0
In Bioconductor since	BioC 3.12 (R-4.0) (2 years)
License	MIT + file LICENSE
Depends	DelayedArray(>= 0.15.16)
Imports	methods, Rcpp, tiledb, S4Vectors
LinkingTo	Rcpp
Suggests	knitr, Matrix, rmarkdown, BiocStyle, BiocParallel, testthat
SystemRequirements
Enhances
URL	https://github.com/LTLA/TileDBArray
BugReports	https://github.com/LTLA/TileDBArray
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TileDBArray_1.6.0.tar.gz
Windows Binary	TileDBArray_1.6.0.zip
macOS Binary (x86_64)	TileDBArray_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TileDBArray
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TileDBArray
Package Short Url	https://bioconductor.org/packages/TileDBArray/
Package Downloads Report	Download Stats