example_proteome {proBatch} | R Documentation |
This is OpenSWATH-output data from Aging study with all iRT, spike-in peptides,
few representative peptides and proteins for signal improvement demonstration.
Using matrix_to_long
can be converted to example_proteome_matrix
example_proteome
A data frame with 124655 rows and 7 variables:
peptide ID, which is regular feature level.
This column is mostly used as feature_id_col
used for merging with
"example_peptide_annotation"
peptide group intensity in given sample.
Used in function as measure_col
Protein group ID, specified as
N/UniProtID1|UniProtID2|...,
where N is number of protein peptide group maps to. If
1/UniProtID, then this is proteotypic peptide, in functions used as
protein_col
name of the file, in most functions used for
sample_id_col
column marking the quality of peptide IDs, used as
qual_col
throughout the script; when qual_value
is 2 in this
column, peptide has been imputed (requantified)
...
PRIDE ID will be added upon the publication of the dataset