Multi-omics Classification, Functional Enrichment and Network Inference analysis


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Documentation for package ‘multiSight’ version 1.4.0

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assessPerformance_Biosigner MLmodels biosigner function
assessPerformance_Diablo MLmodels diablo function
biosignerRes Biosigner results
buildFeatTable Models util function
convertToEntrezid Understand utils function
correlationNetworkInference Correlation network inference
deseqRes multiSight results
diabloRes Diablo results
enrichResList multiSight results
enrichWP Util function From clusterProfiler
getDataSelectedFeatures Select only data values from diablo features selected.
mod_hypothesisGenerator_server hypothesisGenerator Server Function
mod_understand_server understand Server Function
mod_understand_ui understand UI Function
mod_user_input_server user_input Server Function
mutualInformationNI Mutual Information network inference
omic2 Multi-omic data with 2 omics.
partialCorrelationNI Partial Correlation network inference
pubmedInsight Select only data values from diablo features selected.
runFeatureNumberTuning diablo util function
runMultiDeseqAnalysis Enrichment function
runMultiEnrichment Main understand module function
runMultiEnrichment_result multiSight results
runSPLSDA MLmodels diablo function
runSVMRFmodels_Biosigner MLmodels biosigner function
run_app Run the Shiny Application
splitDatatoTrainTest MLmodels util function
stoufferTable Stouffer's p-value computing with all pvalues from all enrichment tables provided and all gene sets to build enrichment maps.