bioconductor
3.11
bioc
manuals
..
ABAEnrichment/
ABSSeq/
ABarray/
ACE/
ACME/
ADAM/
ADAMgui/
ADaCGH2/
AGDEX/
AIMS/
ALDEx2/
ALPS/
AMARETTO/
AMOUNTAIN/
ANF/
APAlyzer/
ARRmNormalization/
ASAFE/
ASEB/
ASGSCA/
ASICS/
ASSET/
ASSIGN/
ASpediaFI/
ASpli/
ATACseqQC/
AUCell/
AWFisher/
AffiXcan/
AffyCompatible/
AffyExpress/
AffyRNADegradation/
AgiMicroRna/
AllelicImbalance/
AlphaBeta/
AnVIL/
AnalysisPageServer/
Anaquin/
AneuFinder/
AnnotationDbi/
AnnotationFilter/
AnnotationForge/
AnnotationFuncs/
AnnotationHub/
AnnotationHubData/
ArrayExpress/
ArrayExpressHTS/
ArrayTV/
ArrayTools/
AssessORF/
Autotuner/
BAC/
BADER/
BAGS/
BANDITS/
BASiCS/
BBCAnalyzer/
BCRANK/
BDMMAcorrect/
BEARscc/
BEAT/
BEclear/
BGmix/
BHC/
BLMA/
BPRMeth/
BRAIN/
BRGenomics/
BSgenome/
BUMHMM/
BUS/
BUScorrect/
BUSpaRse/
BaalChIP/
BadRegionFinder/
BaseSpaceR/
Basic4Cseq/
BasicSTARRseq/
BatchQC/
BayesKnockdown/
BayesPeak/
BeadDataPackR/
BgeeCall/
BgeeDB/
BiFET/
BiGGR/
BiRewire/
BiSeq/
BicARE/
BioCor/
BioMM/
BioMVCClass/
BioNet/
BioNetStat/
BioQC/
BioSeqClass/
BioTIP/
Biobase/
BiocCaseStudies/
BiocCheck/
BiocDockerManager/
BiocFileCache/
BiocGenerics/
BiocNeighbors/
BiocOncoTK/
BiocParallel/
BiocPkgTools/
BiocSet/
BiocSingular/
BiocSklearn/
BiocStyle/
BiocVersion/
BiocWorkflowTools/
Biostrings/
BitSeq/
BrainStars/
BridgeDbR/
BrowserViz/
BubbleTree/
BufferedMatrix/
BufferedMatrixMethods/
CAFE/
CAGEfightR/
CAGEr/
CAMERA/
CAMTHC/
CARNIVAL/
CATALYST/
CAnD/
CCPROMISE/
CEMiTool/
CFAssay/
CGEN/
CGHbase/
CGHcall/
CGHnormaliter/
CGHregions/
CHARGE/
CHETAH/
CHRONOS/
CINdex/
CMA/
CNAnorm/
CNEr/
CNORdt/
CNORfeeder/
CNORfuzzy/
CNORode/
CNTools/
CNVPanelizer/
CNVRanger/
CNVfilteR/
CNVrd2/
CNVtools/
COCOA/
CODEX/
COHCAP/
COMPASS/
CONFESS/
CORREP/
COSNet/
CRISPRseek/
CRImage/
CSAR/
CSSP/
CSSQ/
CancerInSilico/
CancerMutationAnalysis/
CancerSubtypes/
Cardinal/
Category/
CausalR/
CeTF/
CellBench/
CellMapper/
CellMixS/
CellNOptR/
CellScore/
CellTrails/
CexoR/
ChAMP/
ChIC/
ChIPComp/
ChIPQC/
ChIPSeqSpike/
ChIPXpress/
ChIPanalyser/
ChIPexoQual/
ChIPpeakAnno/
ChIPseeker/
ChIPseqR/
ChIPsim/
ChemmineOB/
ChemmineR/
Chicago/
ChromHeatMap/
CiteFuse/
ClassifyR/
Clomial/
Clonality/
CluMSID/
ClusterJudge/
ClusterSignificance/
CoCiteStats/
CoGAPS/
CoRegFlux/
CoRegNet/
CompGO/
ComplexHeatmap/
ConsensusClusterPlus/
CopyNumberPlots/
CopywriteR/
CorMut/
CoreGx/
Cormotif/
CountClust/
CoverageView/
CrispRVariants/
CrossICC/
CytoDx/
CytoML/
DAMEfinder/
DAPAR/
DART/
DBChIP/
DChIPRep/
DECIPHER/
DEComplexDisease/
DEFormats/
DEGraph/
DEGreport/
DEGseq/
DEP/
DEScan2/
DESeq/
DESeq2/
DEWSeq/
DEXSeq/
DEqMS/
DEsingle/
DEsubs/
DFP/
DIAlignR/
DMCFB/
DMCHMM/
DMRScan/
DMRcaller/
DMRcate/
DMRforPairs/
DNABarcodeCompatibility/
DNABarcodes/
DNAcopy/
DNAshapeR/
DOSE/
DRIMSeq/
DSS/
DTA/
DaMiRseq/
DeMAND/
DeMixT/
DeconRNASeq/
DeepBlueR/
DelayedArray/
DelayedDataFrame/
DelayedMatrixStats/
DepecheR/
DiffBind/
DiffLogo/
Director/
DirichletMultinomial/
DiscoRhythm/
DominoEffect/
Doscheda/
DriverNet/
DropletUtils/
DrugVsDisease/
Dune/
DupChecker/
DynDoc/
EBImage/
EBSEA/
EBSeq/
EBSeqHMM/
EBarrays/
EBcoexpress/
EDASeq/
EDDA/
EGAD/
EGSEA/
ELBOW/
ELMER/
EMDomics/
ENCODExplorer/
ENVISIONQuery/
ENmix/
ERSSA/
EasyqpcR/
EmpiricalBrownsMethod/
EnMCB/
EnhancedVolcano/
EnrichedHeatmap/
EnrichmentBrowser/
EpiDISH/
EpiTxDb/
EventPointer/
ExCluster/
ExiMiR/
ExperimentHub/
ExperimentHubData/
ExploreModelMatrix/
ExpressionAtlas/
ExpressionView/
FCBF/
FELLA/
FEM/
FGNet/
FISHalyseR/
FRASER/
FRGEpistasis/
FamAgg/
FastqCleaner/
FindMyFriends/
FitHiC/
FlowRepositoryR/
FlowSOM/
FoldGO/
FourCSeq/
FunChIP/
FunciSNP/
GA4GHclient/
GA4GHshiny/
GAPGOM/
GARS/
GAprediction/
GCSConnection/
GCSscore/
GDCRNATools/
GDSArray/
GEM/
GENESIS/
GENIE3/
GEOmetadb/
GEOquery/
GEOsubmission/
GEWIST/
GGBase/
GGPA/
GGtools/
GIGSEA/
GISPA/
GLAD/
GMRP/
GNET2/
GOFunction/
GOSemSim/
GOSim/
GOTHiC/
GOexpress/
GOfuncR/
GOpro/
GOstats/
GOsummaries/
GPA/
GRENITS/
GRmetrics/
GRridge/
GSALightning/
GSAR/
GSCA/
GSEABase/
GSEABenchmarkeR/
GSEAlm/
GSRI/
GSReg/
GSVA/
GUIDEseq/
GWASTools/
GateFinder/
GenRank/
GenVisR/
GeneAccord/
GeneAnswers/
GeneBreak/
GeneExpressionSignature/
GeneGA/
GeneGeneInteR/
GeneMeta/
GeneNetworkBuilder/
GeneOverlap/
GeneRegionScan/
GeneSelectMMD/
GeneStructureTools/
GeneTonic/
GeneticsDesign/
GeneticsPed/
GenoGAM/
GenomeInfoDb/
GenomicAlignments/
GenomicDataCommons/
GenomicFeatures/
GenomicFiles/
GenomicInteractions/
GenomicOZone/
GenomicRanges/
GenomicScores/
GenomicTuples/
GladiaTOX/
Glimma/
GlobalAncova/
GmicR/
GraphAT/
GraphAlignment/
GraphPAC/
GreyListChIP/
Guitar/
Gviz/
HCABrowser/
HCAExplorer/
HDF5Array/
HDTD/
HELP/
HEM/
HIBAG/
HIPPO/
HIREewas/
HMMcopy/
HPAanalyze/
HTSFilter/
HTSeqGenie/
HTqPCR/
Harman/
Harshlight/
Heatplus/
HelloRanges/
HiCBricks/
HiCcompare/
HiLDA/
HiTC/
HilbertCurve/
HilbertVis/
HilbertVisGUI/
HumanTranscriptomeCompendium/
HybridMTest/
IHW/
IMAS/
IMMAN/
IMPCdata/
INDEED/
INPower/
INSPEcT/
IONiseR/
IPO/
IPPD/
IRanges/
ISoLDE/
ITALICS/
IVAS/
IWTomics/
Icens/
IdeoViz/
IgGeneUsage/
Imetagene/
ImmuneSpaceR/
ImpulseDE/
ImpulseDE2/
InPAS/
InTAD/
IntEREst/
InterMineR/
InteractionSet/
IntramiRExploreR/
IsoCorrectoR/
IsoCorrectoRGUI/
IsoGeneGUI/
IsoformSwitchAnalyzeR/
JunctionSeq/
KCsmart/
KEGGREST/
KEGGgraph/
KEGGlincs/
KEGGprofile/
KinSwingR/
KnowSeq/
LACE/
LBE/
LEA/
LINC/
LMGene/
LOBSTAHS/
LOLA/
LPE/
LPEadj/
LRBaseDbi/
LedPred/
LineagePulse/
LinkHD/
Linnorm/
LiquidAssociation/
Logolas/
LoomExperiment/
LowMACA/
LymphoSeq/
M3C/
M3D/
M3Drop/
MACPET/
MACSQuantifyR/
MADSEQ/
MAGeCKFlute/
MAIT/
MANOR/
MAST/
MBASED/
MBAmethyl/
MBCB/
MBQN/
MBttest/
MCbiclust/
MDTS/
MEAL/
MEAT/
MEB/
MEDIPS/
MEDME/
MEIGOR/
MGFM/
MGFR/
MIGSA/
MIMOSA/
MIRA/
MLInterfaces/
MLP/
MLSeq/
MMAPPR2/
MMDiff2/
MMUPHin/
MODA/
MOFA/
MOMA/
MOSim/
MPFE/
MPRAnalyze/
MSGFgui/
MSGFplus/
MSnID/
MSnbase/
MSstats/
MSstatsQC/
MSstatsQCgui/
MSstatsSampleSize/
MSstatsTMT/
MVCClass/
MWASTools/
Maaslin2/
MantelCorr/
MassArray/
MassSpecWavelet/
MatrixGenerics/
MatrixRider/
MaxContrastProjection/
MeSHDbi/
MeasurementError.cor/
Melissa/
MergeMaid/
Mergeomics/
MetCirc/
MetID/
MetNet/
MetaCyto/
MetaNeighbor/
MetaVolcanoR/
Metab/
MetaboSignal/
MethCP/
MethPed/
MethTargetedNGS/
MethylAid/
MethylMix/
MethylSeekR/
Mfuzz/
MiChip/
MiPP/
MiRaGE/
MicrobiotaProcess/
MineICA/
MinimumDistance/
Mirsynergy/
MmPalateMiRNA/
MoPS/
Modstrings/
MoonlightR/
MotIV/
MotifDb/
MsCoreUtils/
Mulcom/
MultiAssayExperiment/
MultiDataSet/
MultiMed/
MutationalPatterns/
NADfinder/
NBAMSeq/
NBSplice/
NCIgraph/
NOISeq/
NPARC/
NTW/
NanoStringDiff/
NanoStringQCPro/
NarrowPeaks/
NeighborNet/
NetPathMiner/
NetSAM/
NoRCE/
NormalyzerDE/
NormqPCR/
NuPoP/
OCplus/
OGSA/
OLIN/
OLINgui/
OMICsPCA/
OPWeight/
ORFik/
OSAT/
OTUbase/
OUTRIDER/
OVESEG/
OmaDB/
OmicCircos/
OmicsLonDA/
OmicsMarkeR/
OmnipathR/
Onassis/
OncoScore/
OncoSimulR/
OpenStats/
OrderedList/
Organism.dplyr/
OrganismDbi/
Oscope/
OutlierD/
PAA/
PADOG/
PAIRADISE/
PANR/
PAST/
PCAN/
PCAtools/
PCpheno/
PECA/
PERFect/
PGA/
PGSEA/
PICS/
PING/
PLPE/
POST/
PPInfer/
PREDA/
PROMISE/
PROPER/
PROPS/
PROcess/
PSEA/
PSICQUIC/
PWMEnrich/
PanVizGenerator/
Path2PPI/
PathNet/
PathoStat/
PathwaySplice/
PepsNMR/
PharmacoGx/
PhenStat/
PhyloProfile/
Pi/
Pigengene/
PloGO2/
PoTRA/
Polyfit/
PowerExplorer/
PrInCE/
PrecisionTrialDrawer/
Prize/
Prostar/
ProtGenerics/
ProteoMM/
ProteomicsAnnotationHubData/
PubScore/
PureCN/
Pviz/
QDNAseq/
QSutils/
QUBIC/
Qtlizer/
QuartPAC/
QuasR/
QuaternaryProd/
R3CPET/
R453Plus1Toolbox/
R4RNA/
RBGL/
RBM/
RBioinf/
RCAS/
RCASPAR/
RCM/
RCy3/
RCyjs/
RDAVIDWebService/
RDRToolbox/
REBET/
REDseq/
REMP/
RGMQL/
RGSEA/
RGalaxy/
RGraph2js/
RITAN/
RIVER/
RImmPort/
RJMCMCNucleosomes/
RLMM/
RMassBank/
RNAAgeCalc/
RNASeqPower/
RNASeqR/
RNAdecay/
RNAinteract/
RNAither/
RNAmodR/
RNAmodR.AlkAnilineSeq/
RNAmodR.ML/
RNAmodR.RiboMethSeq/
RNAprobR/
RNAsense/
ROC/
ROCpAI/
ROSeq/
ROTS/
ROntoTools/
RPA/
RProtoBufLib/
RRHO/
RSVSim/
RSeqAn/
RTCA/
RTCGA/
RTCGAToolbox/
RTN/
RTNduals/
RTNsurvival/
RTopper/
RUVSeq/
RUVcorr/
RUVnormalize/
RVS/
RaggedExperiment/
RandomWalkRestartMH/
RankProd/
RareVariantVis/
Rariant/
RbcBook1/
Rbowtie/
Rbowtie2/
Rcade/
RchyOptimyx/
RcisTarget/
Rcpi/
Rcwl/
RcwlPipelines/
Rdisop/
ReQON/
ReactomeGSA/
ReactomePA/
ReadqPCR/
RedeR/
RefNet/
RefPlus/
RepViz/
Repitools/
ReportingTools/
Rgin/
Rgraphviz/
Rhdf5lib/
Rhisat2/
Rhtslib/
RiboProfiling/
Ringo/
Risa/
Rmagpie/
RmiR/
Rmmquant/
RnBeads/
Rnits/
Roleswitch/
RpsiXML/
Rqc/
Rsamtools/
Rsubread/
Rtreemix/
S4Vectors/
SAGx/
SAIGEgds/
SBGNview/
SBMLR/
SC3/
SCAN.UPC/
SCANVIS/
SCBN/
SCOPE/
SCnorm/
SDAMS/
SELEX/
SEPIRA/
SEtools/
SGSeq/
SIAMCAT/
SICtools/
SIM/
SIMAT/
SIMD/
SIMLR/
SISPA/
SLGI/
SLqPCR/
SMAD/
SMAP/
SMITE/
SNAGEE/
SNPRelate/
SNPediaR/
SNPhood/
SPEM/
SPIA/
SPLINTER/
SPONGE/
SQLDataFrame/
SQUADD/
SRAdb/
SRGnet/
SSPA/
STAN/
STATegRa/
STRINGdb/
STROMA4/
SVAPLSseq/
SWATH2stats/
SamSPECTRAL/
ScISI/
Scale4C/
Sconify/
SemDist/
SeqArray/
SeqGSEA/
SeqSQC/
SeqVarTools/
SharedObject/
ShortRead/
SigCheck/
SigFuge/
SigsPack/
SimBindProfiles/
SimFFPE/
SingleCellExperiment/
SingleCellSignalR/
SingleR/
SomaticSignatures/
SpacePAC/
Spaniel/
SparseSignatures/
SpatialCPie/
SpeCond/
SpectralTAD/
SpidermiR/
SplicingGraphs/
StarBioTrek/
Starr/
Streamer/
Structstrings/
StructuralVariantAnnotation/
SubCellBarCode/
SummarizedBenchmark/
SummarizedExperiment/
Sushi/
SwathXtend/
SwimR/
SynExtend/
SynMut/
TAPseq/
TBSignatureProfiler/
TCC/
TCGAbiolinks/
TCGAbiolinksGUI/
TCGAutils/
TCseq/
TDARACNE/
TEQC/
TFARM/
TFBSTools/
TFEA.ChIP/
TFHAZ/
TFutils/
TIN/
TMixClust/
TNBC.CMS/
TOAST/
TPP/
TPP2D/
TRONCO/
TSCAN/
TSRchitect/
TTMap/
TVTB/
TarSeqQC/
TargetScore/
TargetSearch/
TimeSeriesExperiment/
TissueEnrich/
TitanCNA/
TnT/
ToPASeq/
TransView/
TreeAndLeaf/
TreeSummarizedExperiment/
Trendy/
TurboNorm/
TxRegInfra/
TypeInfo/
UNDO/
Ularcirc/
UniProt.ws/
Uniquorn/
VCFArray/
VanillaICE/
VariantAnnotation/
VariantExperiment/
VariantFiltering/
VariantTools/
Vega/
VegaMC/
VennDetail/
ViSEAGO/
Wrench/
XBSeq/
XCIR/
XDE/
XINA/
XVector/
Xeva/
YAPSA/
a4/
a4Base/
a4Classif/
a4Core/
a4Preproc/
a4Reporting/
aCGH/
abseqR/
acde/
adSplit/
adaptest/
adductomicsR/
affxparser/
affy/
affyContam/
affyILM/
affyPLM/
affyPara/
affyQCReport/
affycomp/
affycoretools/
affyio/
affylmGUI/
agilp/
alevinQC/
alpine/
alsace/
altcdfenvs/
amplican/
animalcules/
annaffy/
annmap/
annotate/
annotationTools/
annotatr/
anota/
anota2seq/
antiProfiles/
apComplex/
apeglm/
appreci8R/
aroma.light/
arrayMvout/
arrayQuality/
arrayQualityMetrics/
artMS/
atSNP/
attract/
bacon/
ballgown/
bamsignals/
banocc/
basecallQC/
basilisk/
basilisk.utils/
batchelor/
bayNorm/
baySeq/
bcSeq/
beachmat/
beadarray/
beadarraySNP/
bgafun/
bgx/
bigPint/
bigmelon/
bigmemoryExtras/
bioCancer/
bioDist/
bioassayR/
biobroom/
biobtreeR/
biocGraph/
biocViews/
biomaRt/
biomformat/
biomvRCNS/
biosigner/
biosvd/
biotmle/
biovizBase/
birta/
biscuiteer/
blacksheepr/
blima/
bnbc/
brainflowprobes/
branchpointer/
breakpointR/
brendaDb/
bridge/
bsseq/
bumphunter/
cBioPortalData/
cTRAP/
caOmicsV/
calm/
canceR/
cancerclass/
casper/
categoryCompare/
cbaf/
ccfindR/
ccmap/
ccrepe/
ceRNAnetsim/
celaref/
celda/
cellHTS2/
cellTree/
cellbaseR/
cellity/
cellscape/
cghMCR/
chimera/
chimeraviz/
chipenrich/
chipseq/
chopsticks/
chromDraw/
chromPlot/
chromVAR/
chromstaR/
chromswitch/
cicero/
circRNAprofiler/
cisPath/
cleanUpdTSeq/
cleaver/
clippda/
clipper/
cliqueMS/
clonotypeR/
clst/
clstutils/
clustComp/
clusterExperiment/
clusterProfiler/
clusterSeq/
clusterStab/
clustifyr/
cmapR/
cn.farms/
cn.mops/
cnvGSA/
coGPS/
coMET/
coRdon/
cobindR/
codelink/
coexnet/
cogena/
cola/
combi/
compEpiTools/
compartmap/
compcodeR/
consensus/
consensusDE/
consensusOV/
consensusSeekeR/
contiBAIT/
conumee/
convert/
copa/
copynumber/
coseq/
cosmiq/
countsimQC/
covEB/
covRNA/
cpvSNP/
cqn/
crisprseekplus/
crlmm/
crossmeta/
csaw/
ctc/
ctgGEM/
ctsGE/
cummeRbund/
customProDB/
cycle/
cydar/
cytofast/
cytolib/
cytomapper/
daMA/
dada2/
dagLogo/
dcGSA/
dcanr/
ddCt/
ddPCRclust/
dearseq/
debCAM/
debrowser/
deco/
decompTumor2Sig/
decontam/
deepSNV/
deltaCaptureC/
deltaGseg/
derfinder/
derfinderHelper/
derfinderPlot/
destiny/
dexus/
diffGeneAnalysis/
diffHic/
diffcoexp/
diffcyt/
diffloop/
diffuStats/
diggit/
discordant/
distinct/
dittoSeq/
divergence/
dks/
dmrseq/
doppelgangR/
doseR/
dpeak/
drawProteins/
dualKS/
dupRadar/
dyebias/
easyRNASeq/
easyreporting/
ecolitk/
edge/
edgeR/
eegc/
eiR/
eisa/
eisaR/
enrichTF/
enrichplot/
ensemblVEP/
ensembldb/
epiNEM/
epigenomix/
epihet/
epivizr/
epivizrChart/
epivizrData/
epivizrServer/
epivizrStandalone/
erccdashboard/
erma/
esATAC/
esetVis/
eudysbiome/
evaluomeR/
exomeCopy/
exomePeak2/
explorase/
fCCAC/
fCI/
fabia/
factDesign/
farms/
fastLiquidAssociation/
fastseg/
fcScan/
fcoex/
fdrame/
ffpe/
fgsea/
fishpond/
flagme/
flowAI/
flowBeads/
flowBin/
flowCHIC/
flowCL/
flowClean/
flowClust/
flowCore/
flowCyBar/
flowDensity/
flowFP/
flowFit/
flowMap/
flowMatch/
flowMeans/
flowMerge/
flowPeaks/
flowPloidy/
flowPlots/
flowSpecs/
flowSpy/
flowStats/
flowTime/
flowTrans/
flowType/
flowUtils/
flowVS/
flowViz/
flowWorkspace/
flowcatchR/
fmcsR/
focalCall/
frenchFISH/
frma/
frmaTools/
funtooNorm/
gCMAP/
gCMAPWeb/
gCrisprTools/
gQTLBase/
gQTLstats/
gaga/
gage/
gaggle/
gaia/
garfield/
gcapc/
gcatest/
gcrma/
gdsfmt/
geNetClassifier/
geecc/
gemini/
genArise/
genbankr/
geneAttribution/
geneClassifiers/
geneRecommender/
geneRxCluster/
geneXtendeR/
genefilter/
genefu/
geneplast/
geneplotter/
genoCN/
genomation/
genomeIntervals/
genomes/
genoset/
genotypeeval/
genphen/
gep2pep/
gespeR/
ggbio/
ggcyto/
ggtree/
girafe/
glmGamPoi/
glmSparseNet/
globalSeq/
globaltest/
gmapR/
gmoviz/
goProfiles/
goSTAG/
goTools/
goseq/
gpart/
gpls/
gprege/
gpuMagic/
gramm4R/
graper/
graph/
graphite/
groHMM/
gscreend/
gsean/
gtrellis/
gwascat/
gwasurvivr/
h5vc/
hapFabia/
heatmaps/
hiAnnotator/
hiReadsProcessor/
hicrep/
hierGWAS/
hierinf/
hipathia/
hmdbQuery/
hopach/
hpar/
hypeR/
hyperdraw/
hypergraph/
iASeq/
iBBiG/
iBMQ/
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