## ----style, eval=TRUE, echo=FALSE, results="asis"------------------------
BiocStyle::latex()


## ----'setup', include = FALSE, cache = FALSE-----------------------------
library("knitr")
opts_chunk$set(fig.align = 'center', 
               fig.show = 'hold', 
               par = TRUE,
               prompt = FALSE,
               comment = NA)
options(replace.assign = TRUE, 
        width = 65)


## ----environment, cache=FALSE, echo=FALSE--------------------------------
suppressPackageStartupMessages(library(MSnbase))


## ----pSet----------------------------------------------------------------
getClass("pSet")


## ----MSnExp--------------------------------------------------------------
getClass("MSnExp")


## ----MSnSet--------------------------------------------------------------
getClass("MSnSet")


## ----MSnProcess----------------------------------------------------------
getClass("MSnProcess")


## ----MIAPE---------------------------------------------------------------
getClass("MIAPE")


## ----Spectrum------------------------------------------------------------
getClass("Spectrum")


## ----Spectrum1-----------------------------------------------------------
getClass("Spectrum1")


## ----Spectrum2-----------------------------------------------------------
getClass("Spectrum2")


## ----ReporterIons--------------------------------------------------------
getClass("ReporterIons")


## ----NAnnotatedDF--------------------------------------------------------
getClass("NAnnotatedDataFrame")


## ----sessioninfo, results='asis', echo=FALSE, cache=FALSE----------------
toLatex(sessionInfo())