| .. |
| CytoscapeConnection.Rd |
| CytoscapeConnectionClass-class.Rd |
| CytoscapeWindow.Rd |
| CytoscapeWindowClass-class.Rd |
| RCytoscape.pdf |
| addCyEdge.Rd |
| addCyNode.Rd |
| addGraphToGraph.Rd |
| clearMsg.Rd |
| clearSelection.Rd |
| copyVisualStyle.Rd |
| createWindow.Rd |
| createWindowFromSelection.Rd |
| cy2.edge.names.Rd |
| deleteAllWindows.Rd |
| deleteEdgeAttribute.Rd |
| deleteNodeAttribute.Rd |
| deleteSelectedEdges.Rd |
| deleteSelectedNodes.Rd |
| deleteWindow.Rd |
| displayGraph.Rd |
| dockPanel.Rd |
| eda.Rd |
| eda.names.Rd |
| existing.CytoscapeWindow.Rd |
| fitContent.Rd |
| fitSelectedContent.Rd |
| floatPanel.Rd |
| getAllEdgeAttributes.Rd |
| getAllEdges.Rd |
| getAllNodeAttributes.Rd |
| getAllNodes.Rd |
| getArrowShapes.Rd |
| getAttributeClassNames.Rd |
| getCenter.Rd |
| getDefaultBackgroundColor.Rd |
| getDefaultEdgeReverseSelectionColor.Rd |
| getDefaultEdgeSelectionColor.Rd |
| getDefaultNodeReverseSelectionColor.Rd |
| getDefaultNodeSelectionColor.Rd |
| getDirectlyModifiableVisualProperties.Rd |
| getEdgeAttribute.Rd |
| getEdgeAttributeNames.Rd |
| getEdgeCount.Rd |
| getFirstNeighbors.Rd |
| getGraph.Rd |
| getGraphFromCyWindow.Rd |
| getLayoutNameMapping.Rd |
| getLayoutNames.Rd |
| getLayoutPropertyNames.Rd |
| getLayoutPropertyType.Rd |
| getLayoutPropertyValue.Rd |
| getLineStyles.Rd |
| getNodeAttribute.Rd |
| getNodeAttributeNames.Rd |
| getNodeCount.Rd |
| getNodeShapes.Rd |
| getPosition.Rd |
| getSelectedEdgeCount.Rd |
| getSelectedEdges.Rd |
| getSelectedNodeCount.Rd |
| getSelectedNodes.Rd |
| getViewCoordinates.Rd |
| getVisualStyleNames.Rd |
| getWindowCount.Rd |
| getWindowID.Rd |
| getWindowList.Rd |
| getZoom.Rd |
| hideAllPanels.Rd |
| hideNodes.Rd |
| hidePanel.Rd |
| hideSelectedEdges.Rd |
| hideSelectedNodes.Rd |
| initEdgeAttribute.Rd |
| initNodeAttribute.Rd |
| invertEdgeSelection.Rd |
| invertNodeSelection.Rd |
| layout.Rd |
| lockNodeDimensions.Rd |
| makeRandomGraph.Rd |
| makeSimpleGraph.Rd |
| msg.Rd |
| new.CytoscapeWindow.Rd |
| noa.Rd |
| noa.names.Rd |
| ping.Rd |
| raiseWindow.Rd |
| redraw.Rd |
| saveImage.Rd |
| saveNetwork.Rd |
| selectEdges.Rd |
| selectFirstNeighborsOfSelectedNodes.Rd |
| selectNodes.Rd |
| sendEdges.Rd |
| sendNodes.Rd |
| setCenter.Rd |
| setDefaultBackgroundColor.Rd |
| setDefaultEdgeColor.Rd |
| setDefaultEdgeLineWidth.Rd |
| setDefaultEdgeReverseSelectionColor.Rd |
| setDefaultEdgeSelectionColor.Rd |
| setDefaultNodeBorderColor.Rd |
| setDefaultNodeBorderWidth.Rd |
| setDefaultNodeColor.Rd |
| setDefaultNodeFontSize.Rd |
| setDefaultNodeLabelColor.Rd |
| setDefaultNodeReverseSelectionColor.Rd |
| setDefaultNodeSelectionColor.Rd |
| setDefaultNodeShape.Rd |
| setDefaultNodeSize.Rd |
| setEdgeAttributes.Rd |
| setEdgeAttributesDirect.Rd |
| setEdgeColorDirect.Rd |
| setEdgeColorRule.Rd |
| setEdgeFontSizeDirect.Rd |
| setEdgeLabelColorDirect.Rd |
| setEdgeLabelDirect.Rd |
| setEdgeLabelOpacityDirect.Rd |
| setEdgeLabelRule.Rd |
| setEdgeLabelWidthDirect.Rd |
| setEdgeLineStyleDirect.Rd |
| setEdgeLineStyleRule.Rd |
| setEdgeLineWidthDirect.Rd |
| setEdgeLineWidthRule.Rd |
| setEdgeOpacityDirect.Rd |
| setEdgeSourceArrowColorDirect.Rd |
| setEdgeSourceArrowColorRule.Rd |
| setEdgeSourceArrowOpacityDirect.Rd |
| setEdgeSourceArrowRule.Rd |
| setEdgeSourceArrowShapeDirect.Rd |
| setEdgeTargetArrowColorDirect.Rd |
| setEdgeTargetArrowColorRule.Rd |
| setEdgeTargetArrowOpacityDirect.Rd |
| setEdgeTargetArrowRule.Rd |
| setEdgeTargetArrowShapeDirect.Rd |
| setEdgeTooltipDirect.Rd |
| setEdgeTooltipRule.Rd |
| setGraph.Rd |
| setLayoutProperties.Rd |
| setNodeAttributes.Rd |
| setNodeBorderColorRule.Rd |
| setNodeBorderOpacityDirect.Rd |
| setNodeBorderWidthRule.Rd |
| setNodeColorDirect.Rd |
| setNodeColorRule.Rd |
| setNodeFillOpacityDirect.Rd |
| setNodeFontSizeDirect.Rd |
| setNodeHeightDirect.Rd |
| setNodeImageDirect.Rd |
| setNodeLabelDirect.Rd |
| setNodeLabelOpacityDirect.Rd |
| setNodeLabelRule.Rd |
| setNodeOpacityDirect.Rd |
| setNodeShapeDirect.Rd |
| setNodeShapeRule.Rd |
| setNodeSizeDirect.Rd |
| setNodeSizeRule.Rd |
| setNodeTooltipRule.Rd |
| setNodeWidthDirect.Rd |
| setNotAttributesDirect.Rd |
| setPosition.Rd |
| setVisualStyle.Rd |
| setWindowSize.Rd |
| setZoom.Rd |
| showGraphicsDetails.Rd |
| unhideAll.Rd |
| unhideNodes.Rd |
| validCyWin.Rd |
| version.Rd |